RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 FSBPO95073 299 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 GDF11O95390 407 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 CPA2P48052 419 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 BASP1P80723 227 aaKnown RBP14.49□□□□□ -0.09
USP42-206ENST00000479544 CDR2Q01850 454 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 ITIH3Q06033 890 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 FAM161BQ96MY7 647 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 RASSF10A6NK89 507 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 HSPA9P38646 679 aaKnown RBP14.48□□□□□ -0.09
USP42-206ENST00000479544 CTCFP49711 727 aaPredicted RBP14.48□□□□□ -0.09
USP42-206ENST00000479544 RCAN1P53805 252 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 SPATA24Q86W54 205 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 PARVGQ9HBI0 331 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 METTL5Q9NRN9 209 aaKnown RBP14.48□□□□□ -0.09
USP42-206ENST00000479544 ABCF3Q9NUQ8 709 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 STOML1Q9UBI4 398 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 HAO1Q9UJM8 370 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 INHBAP08476 426 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 KRT17Q04695 432 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 SEPT2Q15019 361 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 ACCSLQ4AC99 568 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 C2CD6Q53TS8 623 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 SH3RF1Q7Z6J0 888 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 SYT2Q8N9I0 419 aaPredicted RBP14.48□□□□□ -0.09
USP42-206ENST00000479544 POMGNT1Q8WZA1 660 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 BTBD6Q96KE9 485 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 SH3GLB2Q9NR46 395 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 ALG6Q9Y672 507 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 IRX1P78414 480 aaPredicted RBP14.48□□□□□ -0.09
USP42-206ENST00000479544 TMED1Q13445 227 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 GRM4Q14833 912 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 SEC23AQ15436 765 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 EPC2Q52LR7 807 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 XKR9Q5GH70 373 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 AGBL2Q5U5Z8 902 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 MIER3Q7Z3K6 550 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 MAIP1Q8WWC4 291 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 ANO3Q9BYT9 981 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 NPHS2Q9NP85 383 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 SRP68Q9UHB9 627 aaKnown RBP14.48□□□□□ -0.09
USP42-206ENST00000479544 SYNGAP1Q96PV0 1343 aa14.48□□□□□ -0.09
USP42-206ENST00000479544 ZNF263O14978 683 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 LGR5O75473 907 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 MT-ND3P03897 115 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 UBTFL6P0CB48 400 aaPredicted RBP14.47□□□□□ -0.09
USP42-206ENST00000479544 NQO1P15559 274 aaKnown RBP14.47□□□□□ -0.09
USP42-206ENST00000479544 SKOR1P84550 965 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 NKX1-1Q15270 411 aaPredicted RBP14.47□□□□□ -0.09
USP42-206ENST00000479544 ZNF394Q53GI3 561 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 MTRQ99707 1265 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 NUP85Q9BW27 656 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 PI4K2BG5E9Z4 385 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 SLC37A4O43826 429 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 MYBP10242 640 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 GPC5P78333 572 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 ZC2HC1CQ53FD0 456 aaPredicted RBP14.47□□□□□ -0.09
USP42-206ENST00000479544 SCYL2Q6P3W7 929 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 ZNF571Q7Z3V5 609 aaPredicted RBP14.47□□□□□ -0.09
USP42-206ENST00000479544 TPCN2Q8NHX9 752 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 NT5C1BQ96P26 610 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 SPZ1Q9BXG8 430 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 C1orf112Q9NSG2 853 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 OVOS2A0A0G2JMS6 1433 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 FAM237AA0A1B0GTK4 181 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 A0A1W2PQJ5 194 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 HSPA6P17066 643 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 SAT1P21673 171 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 PBX1P40424 430 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 CASP4P49662 377 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 OVGP1Q12889 678 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 RHOT2Q8IXI1 618 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 ATG4AQ8WYN0 398 aa14.47□□□□□ -0.09
USP42-206ENST00000479544 MAGED2Q9UNF1 606 aaPredicted RBP14.47□□□□□ -0.09
USP42-206ENST00000479544 DCDC2CA8MYV0 355 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 AGTP01019 485 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 KRT19P08727 400 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 CHRNA3P32297 505 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 KCNJ2P63252 427 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 SWT1Q5T5J6 900 aaKnown RBP14.46□□□□□ -0.09
USP42-206ENST00000479544 SLC30A10Q6XR72 485 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.46□□□□□ -0.09
USP42-206ENST00000479544 ZNF564Q8TBZ8 553 aaPredicted RBP14.46□□□□□ -0.09
USP42-206ENST00000479544 UBN1Q9NPG3 1134 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 PRLRP16471 622 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 KLC1Q07866 573 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 RBM26Q5T8P6 1007 aaKnown RBP14.46□□□□□ -0.09
USP42-206ENST00000479544 ANKMY2Q8IV38 441 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 CEP70Q8NHQ1 597 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 NSUN4Q96CB9 384 aaKnown RBP14.46□□□□□ -0.09
USP42-206ENST00000479544 DDX27Q96GQ7 796 aaKnown RBP14.46□□□□□ -0.09
USP42-206ENST00000479544 CALR3Q96L12 384 aaKnown RBP14.46□□□□□ -0.09
USP42-206ENST00000479544 NUDT12Q9BQG2 462 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 PABPC3Q9H361 631 aaKnown RBP14.46□□□□□ -0.09
USP42-206ENST00000479544 TRPC6Q9Y210 931 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 CCDC195A0A1B0GUA6 201 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 STXBP3O00186 592 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 CCND1P24385 295 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 CNGA1P29973 690 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 COPS2P61201 443 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 KCNMA1Q12791 1236 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms