RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 FPGSQ05932 587 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 ITGA7Q13683 1181 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 TTLL4Q14679 1199 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 SHHQ15465 462 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 ZNF124Q15973 351 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 BRDTQ58F21 947 aaPredicted RBP7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 EXOSC6Q5RKV6 272 aaKnown RBP7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 ARHGEF16Q5VV41 709 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 CASC1Q6TDU7 716 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 CHST3Q7LGC8 479 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 FAM126BQ8IXS8 530 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 MB21D2Q8IYB1 491 aaPredicted RBP7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 DEFB123Q8N688 67 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 SAMD3Q8N6K7 520 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 SLC43A3Q8NBI5 491 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 OR6J1Q8NGC5 347 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 SYTL5Q8TDW5 730 aaPredicted RBP7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 IGDCC4Q8TDY8 1250 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 MTMR8Q96EF0 704 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 IWS1Q96ST2 819 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 RMDN3Q96TC7 470 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 MTA3Q9BTC8 594 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 KRTAP4-5Q9BYR2 181 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 LSG1Q9H089 658 aaKnown RBP7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 ANO2Q9NQ90 1003 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 MAP3K20Q9NYL2 800 aaKnown RBP7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 TBX21Q9UL17 535 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 PCDHA1Q9Y5I3 950 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 DBX1A6NMT0 343 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 SLC27A2O14975 620 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 PRC1O43663 620 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 KPNA6O60684 536 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 PPP1R11O60927 126 aaPredicted RBP7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 DDAH1O94760 285 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 CFBP00751 764 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 CD4P01730 458 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 TXNP10599 105 aaKnown RBP7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 RFX1P22670 979 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 KIF5BP33176 963 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 MCM5P33992 734 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 HSD17B4P51659 736 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 ANTXR2P58335 489 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 GHRHRQ02643 423 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 SOX4Q06945 474 aaPredicted RBP7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 TROAPQ12815 778 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 ELOAQ14241 798 aaKnown RBP7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 STXBP2Q15833 593 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 C9orf50Q5SZB4 431 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 TMEM63BQ5T3F8 832 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 CREB3L3Q68CJ9 461 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 ZNF438Q7Z4V0 828 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 HOMER1Q86YM7 354 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 TMTC2Q8N394 836 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 TMEM199Q8N511 208 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 CTCFLQ8NI51 663 aaPredicted RBP7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 TBC1D5Q92609 795 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 TMEM87BQ96K49 555 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 RNPC3Q96LT9 517 aaKnown RBP7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 TAAR1Q96RJ0 339 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 MAP3K14Q99558 947 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 USP26Q9BXU7 913 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 NRSN2Q9GZP1 204 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 SOX17Q9H6I2 414 aaPredicted RBP7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 RIOX1Q9H6W3 641 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 LY9Q9HBG7 655 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 PXMP2Q9NR77 195 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 COL20A1Q9P218 1284 aa7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 TRIP12Q14669 1992 aaPredicted RBP7.86□□□□□ -1.15
CCDC88A-213ENST00000476903 GRIN2DO15399 1336 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 PNMA6FA0A0J9YX94 578 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 CCDC69A6NI79 296 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 CYTH3O43739 400 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 EIF3JO75822 258 aaKnown RBP7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 MYL3P08590 195 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 CALM1P0DP23 149 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 CALM2P0DP24 149 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 CALM3P0DP25 149 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 CES1P23141 567 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 USP11P51784 963 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 PSMC6P62333 389 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 PURAQ00577 322 aaKnown RBP7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 PPIGQ13427 754 aaKnown RBP eCLIP7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 IKBKEQ14164 716 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 NECTIN1Q15223 517 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 FAM109BQ6ICB4 259 aaPredicted RBP7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 MFSD5Q6N075 450 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 SEPT14Q6ZU15 432 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 Q7L0L9 218 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 ATCAYQ86WG3 371 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 SKAP1Q86WV1 359 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 ZNF654Q8IZM8 581 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 STK32AQ8WU08 396 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 BSNDQ8WZ55 320 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 COPS5Q92905 334 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 PIGSQ96S52 555 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 MTG1Q9BT17 334 aaPredicted RBP7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 HIPK3Q9H422 1215 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 TANC1Q9C0D5 1861 aa7.85□□□□□ -1.15
CCDC88A-213ENST00000476903 GBF1Q92538 1859 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 DOCK5Q9H7D0 1870 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms