RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 AFF1P51825 1210 aaKnown RBP15.74■□□□□ 0.11
UPF3A-204ENST00000475218 TWF2Q6IBS0 349 aaKnown RBP15.74■□□□□ 0.11
UPF3A-204ENST00000475218 OTUD6AQ7L8S5 288 aa15.74■□□□□ 0.11
UPF3A-204ENST00000475218 CATSPER4Q7RTX7 472 aa15.74■□□□□ 0.11
UPF3A-204ENST00000475218 TMEM173Q86WV6 379 aaPredicted RBP15.74■□□□□ 0.11
UPF3A-204ENST00000475218 SLC39A11Q8N1S5 342 aa15.74■□□□□ 0.11
UPF3A-204ENST00000475218 C4orf32Q8N8J7 132 aa15.74■□□□□ 0.11
UPF3A-204ENST00000475218 ASAP3Q8TDY4 903 aa15.74■□□□□ 0.11
UPF3A-204ENST00000475218 PIGOQ8TEQ8 1089 aa15.74■□□□□ 0.11
UPF3A-204ENST00000475218 ZSCAN31Q96LW9 406 aaPredicted RBP15.74■□□□□ 0.11
UPF3A-204ENST00000475218 FOXP1Q9H334 677 aaPredicted RBP15.74■□□□□ 0.11
UPF3A-204ENST00000475218 C11orf16Q9NQ32 467 aa15.74■□□□□ 0.11
UPF3A-204ENST00000475218 SH2B1Q9NRF2 756 aaPredicted RBP15.74■□□□□ 0.11
UPF3A-204ENST00000475218 ANKEF1Q9NU02 776 aa15.74■□□□□ 0.11
UPF3A-204ENST00000475218 FAM105AQ9NUU6 356 aa15.74■□□□□ 0.11
UPF3A-204ENST00000475218 MED24O75448 989 aa15.73■□□□□ 0.11
UPF3A-204ENST00000475218 ZP2Q05996 745 aa15.73■□□□□ 0.11
UPF3A-204ENST00000475218 KCNC3Q14003 757 aa15.73■□□□□ 0.11
UPF3A-204ENST00000475218 NBR1Q14596 966 aa15.73■□□□□ 0.11
UPF3A-204ENST00000475218 PUS10Q3MIT2 529 aaKnown RBP15.73■□□□□ 0.11
UPF3A-204ENST00000475218 AGMOQ6ZNB7 445 aa15.73■□□□□ 0.11
UPF3A-204ENST00000475218 ABI1Q8IZP0 508 aa15.73■□□□□ 0.11
UPF3A-204ENST00000475218 RNF149Q8NC42 400 aa15.73■□□□□ 0.11
UPF3A-204ENST00000475218 MRPS27Q92552 414 aaKnown RBP15.73■□□□□ 0.11
UPF3A-204ENST00000475218 MTRQ99707 1265 aa15.73■□□□□ 0.11
UPF3A-204ENST00000475218 INO80BQ9C086 356 aaPredicted RBP15.73■□□□□ 0.11
UPF3A-204ENST00000475218 LZTS1Q9Y250 596 aa15.73■□□□□ 0.11
UPF3A-204ENST00000475218 C19orf67A6NJJ6 358 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 HIDE1A8MVS5 230 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 GAS2O43903 313 aaKnown RBP15.72■□□□□ 0.11
UPF3A-204ENST00000475218 OFD1O75665 1012 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 ARL2P36404 184 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 TOB1P50616 345 aaPredicted RBP15.72■□□□□ 0.11
UPF3A-204ENST00000475218 CAPSQ13938 189 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 ZNF174Q15697 407 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 AMHR2Q16671 573 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 DUSP6Q16828 381 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 CSPP1Q1MSJ5 1256 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 SRGAP1Q7Z6B7 1085 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 CATSPER3Q86XQ3 398 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 EXOC8Q8IYI6 725 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 GJD3Q8N144 294 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 BCL7CQ8WUZ0 217 aaPredicted RBP15.72■□□□□ 0.11
UPF3A-204ENST00000475218 ZNF558Q96NG5 402 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 RAPGEFL1Q9UHV5 662 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 BARX2Q9UMQ3 279 aaPredicted RBP15.72■□□□□ 0.11
UPF3A-204ENST00000475218 NT5C1B-RDH14C9J2C7 533 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 EYA4O95677 639 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 BCAR1P56945 870 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 PTENP60484 403 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 HMGN5P82970 282 aaKnown RBP15.72■□□□□ 0.11
UPF3A-204ENST00000475218 SAFBQ15424 915 aaKnown RBP eCLIP15.72■□□□□ 0.11
UPF3A-204ENST00000475218 SMAD2Q15796 467 aaKnown RBP15.72■□□□□ 0.11
UPF3A-204ENST00000475218 MRPL10Q7Z7H8 261 aaKnown RBP15.72■□□□□ 0.11
UPF3A-204ENST00000475218 IFNLR1Q8IU57 520 aaPredicted RBP15.72■□□□□ 0.11
UPF3A-204ENST00000475218 NOSTRINQ8IVI9 506 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 TCP11Q8WWU5 503 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 TLE6Q9H808 572 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 TBC1D13Q9NVG8 400 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 SPG21Q9NZD8 308 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 PCDHB2Q9Y5E7 798 aa15.72■□□□□ 0.11
UPF3A-204ENST00000475218 TSPAN1O60635 241 aa15.71■□□□□ 0.11
UPF3A-204ENST00000475218 GLRA2P23416 452 aa15.71■□□□□ 0.11
UPF3A-204ENST00000475218 U2AF2P26368 475 aaKnown RBP eCLIP15.71■□□□□ 0.114e-7■■■■■ 39.1
UPF3A-204ENST00000475218 TECP42680 631 aa15.71■□□□□ 0.11
UPF3A-204ENST00000475218 PLPP4Q5VZY2 271 aa15.71■□□□□ 0.11
UPF3A-204ENST00000475218 SMRP1Q8NCR6 262 aa15.71■□□□□ 0.11
UPF3A-204ENST00000475218 NRDE2Q9H7Z3 1164 aa15.71■□□□□ 0.11
UPF3A-204ENST00000475218 GPRC5CQ9NQ84 441 aa15.71■□□□□ 0.11
UPF3A-204ENST00000475218 CD207Q9UJ71 328 aa15.71■□□□□ 0.11
UPF3A-204ENST00000475218 PI4K2BG5E9Z4 385 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 ASAP2O43150 1006 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 DGAT1O75907 488 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 OR52Z1P0C646 297 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 NDUFV1P49821 464 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 MBTD1Q05BQ5 628 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 COASYQ13057 564 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 SMAD4Q13485 552 aaKnown RBP15.7■□□□□ 0.1
UPF3A-204ENST00000475218 ECM1Q16610 540 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 NOMO2Q5JPE7 1267 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 TTC38Q5R3I4 469 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 POTEGQ6S5H5 508 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 ZNF280BQ86YH2 543 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 SMG8Q8ND04 991 aaKnown RBP15.7■□□□□ 0.1
UPF3A-204ENST00000475218 MICAL1Q8TDZ2 1067 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 TCF25Q9BQ70 676 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 VN1R3Q9BXE9 311 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 EIF2AQ9BY44 585 aaKnown RBP15.7■□□□□ 0.1
UPF3A-204ENST00000475218 DNAJB4Q9UDY4 337 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 RAB27AP51159 221 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 POU5F1BQ06416 359 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 PDE12Q6L8Q7 609 aaKnown RBP15.7■□□□□ 0.1
UPF3A-204ENST00000475218 ADHFE1Q8IWW8 467 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 POLR3CQ9BUI4 534 aaPredicted RBP15.7■□□□□ 0.1
UPF3A-204ENST00000475218 MRPL9Q9BYD2 267 aaKnown RBP15.7■□□□□ 0.1
UPF3A-204ENST00000475218 TUFT1Q9NNX1 390 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 PRKAG3Q9UGI9 489 aa15.7■□□□□ 0.1
UPF3A-204ENST00000475218 USO1O60763 962 aaKnown RBP15.69■□□□□ 0.1
UPF3A-204ENST00000475218 DDHD2O94830 711 aa15.69■□□□□ 0.1
UPF3A-204ENST00000475218 GALTP07902 379 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms