RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 EXOC8Q8IYI6 725 aa20.73■□□□□ 0.91
COL7A1-209ENST00000474432 ABI1Q8IZP0 508 aa20.73■□□□□ 0.91
COL7A1-209ENST00000474432 FBXO18Q8NFZ0 1043 aa20.73■□□□□ 0.91
COL7A1-209ENST00000474432 ZNF558Q96NG5 402 aa20.73■□□□□ 0.91
COL7A1-209ENST00000474432 C11orf16Q9NQ32 467 aa20.73■□□□□ 0.91
COL7A1-209ENST00000474432 POTEMA6NI47 508 aa20.72■□□□□ 0.91
COL7A1-209ENST00000474432 PI4K2BG5E9Z4 385 aa20.72■□□□□ 0.91
COL7A1-209ENST00000474432 PER2O15055 1255 aa20.72■□□□□ 0.91
COL7A1-209ENST00000474432 GAS2O43903 313 aaKnown RBP20.72■□□□□ 0.91
COL7A1-209ENST00000474432 EYA4O95677 639 aa20.72■□□□□ 0.91
COL7A1-209ENST00000474432 KCNC3Q14003 757 aa20.72■□□□□ 0.91
COL7A1-209ENST00000474432 LONRF3Q496Y0 759 aa20.72■□□□□ 0.91
COL7A1-209ENST00000474432 TWF2Q6IBS0 349 aaKnown RBP20.72■□□□□ 0.91
COL7A1-209ENST00000474432 SRGAP1Q7Z6B7 1085 aa20.72■□□□□ 0.91
COL7A1-209ENST00000474432 SLC39A11Q8N1S5 342 aa20.72■□□□□ 0.91
COL7A1-209ENST00000474432 C8orf76Q96K31 380 aa20.72■□□□□ 0.91
COL7A1-209ENST00000474432 ZSCAN31Q96LW9 406 aaPredicted RBP20.72■□□□□ 0.91
COL7A1-209ENST00000474432 ANKEF1Q9NU02 776 aa20.72■□□□□ 0.91
COL7A1-209ENST00000474432 B4GALT3O60512 393 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 OFD1O75665 1012 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 ATP2B1P20020 1258 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 MCM7P33993 719 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 RARRES1P49788 294 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 SMAD4Q13485 552 aaKnown RBP20.71■□□□□ 0.91
COL7A1-209ENST00000474432 DUSP6Q16828 381 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 AGMOQ6ZNB7 445 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 MRPL10Q7Z7H8 261 aaKnown RBP20.71■□□□□ 0.91
COL7A1-209ENST00000474432 RNF149Q8NC42 400 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 TCP11Q8WWU5 503 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 PPP2R3CQ969Q6 453 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 MTRQ99707 1265 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 FOXP1Q9H334 677 aaPredicted RBP20.71■□□□□ 0.91
COL7A1-209ENST00000474432 TLE6Q9H808 572 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 SPG21Q9NZD8 308 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 PRKAG3Q9UGI9 489 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 CD207Q9UJ71 328 aa20.71■□□□□ 0.91
COL7A1-209ENST00000474432 HIDE1A8MVS5 230 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 ASAP2O43150 1006 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 ARL2P36404 184 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 NDUFV1P49821 464 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 PTENP60484 403 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 COASYQ13057 564 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 PDE12Q6L8Q7 609 aaKnown RBP20.7■□□□□ 0.9
COL7A1-209ENST00000474432 TMEM173Q86WV6 379 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-209ENST00000474432 IFNLR1Q8IU57 520 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-209ENST00000474432 ADHFE1Q8IWW8 467 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 C4orf32Q8N8J7 132 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 ASAP3Q8TDY4 903 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 MICAL1Q8TDZ2 1067 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 PIGOQ8TEQ8 1089 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 C1QTNF1Q9BXJ1 281 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 SH2B1Q9NRF2 756 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-209ENST00000474432 RAPGEFL1Q9UHV5 662 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 BARX2Q9UMQ3 279 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-209ENST00000474432 PCDHB2Q9Y5E7 798 aa20.7■□□□□ 0.9
COL7A1-209ENST00000474432 NT5C1B-RDH14C9J2C7 533 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 MED24O75448 989 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 SKIP12755 728 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 COL9A1P20849 921 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 PPM1AP35813 382 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 RAB27AP51159 221 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 AFF1P51825 1210 aaKnown RBP20.69■□□□□ 0.9
COL7A1-209ENST00000474432 BCAR1P56945 870 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 SAFBQ15424 915 aaKnown RBP eCLIP20.69■□□□□ 0.9
COL7A1-209ENST00000474432 ZNF174Q15697 407 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 PLPP4Q5VZY2 271 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 CATSPER3Q86XQ3 398 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 SMRP1Q8NCR6 262 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 TCF25Q9BQ70 676 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 MRPL9Q9BYD2 267 aaKnown RBP20.69■□□□□ 0.9
COL7A1-209ENST00000474432 NRDE2Q9H7Z3 1164 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 TBC1D13Q9NVG8 400 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 FAM50BQ9Y247 325 aa20.69■□□□□ 0.9
COL7A1-209ENST00000474432 DGAT1O75907 488 aa20.68■□□□□ 0.9
COL7A1-209ENST00000474432 XRCC6P12956 609 aaKnown RBP eCLIP20.68■□□□□ 0.9
COL7A1-209ENST00000474432 GLRA2P23416 452 aa20.68■□□□□ 0.9
COL7A1-209ENST00000474432 HMGN5P82970 282 aaKnown RBP20.68■□□□□ 0.9
COL7A1-209ENST00000474432 POU5F1BQ06416 359 aa20.68■□□□□ 0.9
COL7A1-209ENST00000474432 CAPSQ13938 189 aa20.68■□□□□ 0.9
COL7A1-209ENST00000474432 AMHR2Q16671 573 aa20.68■□□□□ 0.9
COL7A1-209ENST00000474432 NOMO2Q5JPE7 1267 aa20.68■□□□□ 0.9
COL7A1-209ENST00000474432 TMEM184AQ6ZMB5 413 aa20.68■□□□□ 0.9
COL7A1-209ENST00000474432 BCL7CQ8WUZ0 217 aaPredicted RBP20.68■□□□□ 0.9
COL7A1-209ENST00000474432 LRFN3Q9BTN0 628 aa20.68■□□□□ 0.9
COL7A1-209ENST00000474432 PUF60Q9UHX1 559 aaKnown RBP20.68■□□□□ 0.9
COL7A1-209ENST00000474432 TSPAN1O60635 241 aa20.67■□□□□ 0.9
COL7A1-209ENST00000474432 SSTR3P32745 418 aaPredicted RBP20.67■□□□□ 0.9
COL7A1-209ENST00000474432 TOB1P50616 345 aaPredicted RBP20.67■□□□□ 0.9
COL7A1-209ENST00000474432 MXD4Q14582 209 aaPredicted RBP20.67■□□□□ 0.9
COL7A1-209ENST00000474432 GLB1LQ6UWU2 654 aa20.67■□□□□ 0.9
COL7A1-209ENST00000474432 ZNF280BQ86YH2 543 aa20.67■□□□□ 0.9
COL7A1-209ENST00000474432 NOSTRINQ8IVI9 506 aa20.67■□□□□ 0.9
COL7A1-209ENST00000474432 SMG8Q8ND04 991 aaKnown RBP20.67■□□□□ 0.9
COL7A1-209ENST00000474432 RSPH1Q8WYR4 309 aa20.67■□□□□ 0.9
COL7A1-209ENST00000474432 CDCA3Q99618 268 aaPredicted RBP20.67■□□□□ 0.9
COL7A1-209ENST00000474432 TUFT1Q9NNX1 390 aa20.67■□□□□ 0.9
COL7A1-209ENST00000474432 DNAJB4Q9UDY4 337 aa20.67■□□□□ 0.9
COL7A1-209ENST00000474432 GALTP07902 379 aa20.66■□□□□ 0.9
COL7A1-209ENST00000474432 U2AF2P26368 475 aaKnown RBP eCLIP20.66■□□□□ 0.9
COL7A1-209ENST00000474432 TECP42680 631 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms