RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 MXD4Q14582 209 aaPredicted RBP19.95■□□□□ 0.78
UPF3A-203ENST00000474056 ECM1Q16610 540 aa19.95■□□□□ 0.78
UPF3A-203ENST00000474056 LONRF3Q496Y0 759 aa19.95■□□□□ 0.78
UPF3A-203ENST00000474056 LPPQ93052 612 aa19.95■□□□□ 0.78
UPF3A-203ENST00000474056 AAASQ9NRG9 546 aa19.95■□□□□ 0.78
UPF3A-203ENST00000474056 DBR1Q9UK59 544 aaKnown RBP19.95■□□□□ 0.78
UPF3A-203ENST00000474056 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.95■□□□□ 0.78
UPF3A-203ENST00000474056 TDRD15B5MCY1 1934 aaKnown RBP19.95■□□□□ 0.78
UPF3A-203ENST00000474056 MUC3AQ02505 3323 aa19.94■□□□□ 0.78
UPF3A-203ENST00000474056 MYH11P35749 1972 aa19.94■□□□□ 0.78
UPF3A-203ENST00000474056 MEIS3P2A8K0S8 358 aa19.94■□□□□ 0.78
UPF3A-203ENST00000474056 LAG3P18627 525 aa19.94■□□□□ 0.78
UPF3A-203ENST00000474056 GLRA2P23416 452 aa19.94■□□□□ 0.78
UPF3A-203ENST00000474056 PTENP60484 403 aa19.94■□□□□ 0.78
UPF3A-203ENST00000474056 HAUS3Q68CZ6 603 aa19.94■□□□□ 0.78
UPF3A-203ENST00000474056 MAEAQ7L5Y9 396 aa19.94■□□□□ 0.78
UPF3A-203ENST00000474056 THNSL1Q8IYQ7 743 aa19.94■□□□□ 0.78
UPF3A-203ENST00000474056 NACC1Q96RE7 527 aa19.94■□□□□ 0.78
UPF3A-203ENST00000474056 POLR3FQ9H1D9 316 aaPredicted RBP19.94■□□□□ 0.78
UPF3A-203ENST00000474056 GPRC5CQ9NQ84 441 aa19.94■□□□□ 0.78
UPF3A-203ENST00000474056 LRWD1Q9UFC0 647 aa19.94■□□□□ 0.78
UPF3A-203ENST00000474056 FGF18O76093 207 aa19.93■□□□□ 0.78
UPF3A-203ENST00000474056 KCNA5P22460 613 aa19.93■□□□□ 0.78
UPF3A-203ENST00000474056 HOXA11P31270 313 aaPredicted RBP19.93■□□□□ 0.78
UPF3A-203ENST00000474056 GTF2F1P35269 517 aaKnown RBP eCLIP19.93■□□□□ 0.782e-6■■■■□ 26
UPF3A-203ENST00000474056 CCT6AP40227 531 aaKnown RBP19.93■□□□□ 0.78
UPF3A-203ENST00000474056 PBX3P40426 434 aa19.93■□□□□ 0.78
UPF3A-203ENST00000474056 RAB27AP51159 221 aa19.93■□□□□ 0.78
UPF3A-203ENST00000474056 TFDP1Q14186 410 aa19.93■□□□□ 0.78
UPF3A-203ENST00000474056 ADGRD2Q7Z7M1 963 aa19.93■□□□□ 0.78
UPF3A-203ENST00000474056 IFNLR1Q8IU57 520 aaPredicted RBP19.93■□□□□ 0.78
UPF3A-203ENST00000474056 IGSF22Q8N9C0 903 aa19.93■□□□□ 0.78
UPF3A-203ENST00000474056 PABPC5Q96DU9 382 aaKnown RBP19.93■□□□□ 0.78
UPF3A-203ENST00000474056 NECAB3Q96P71 396 aaPredicted RBP19.93■□□□□ 0.78
UPF3A-203ENST00000474056 UHRF1Q96T88 793 aaPredicted RBP19.93■□□□□ 0.78
UPF3A-203ENST00000474056 ZNF623O75123 536 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 ERLIN2O94905 339 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 SKIP12755 728 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 MUTP22033 750 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 HYAL1Q12794 435 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 CUL4AQ13619 759 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 PDIA5Q14554 519 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 COL19A1Q14993 1142 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 IL17AQ16552 155 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 RILPL1Q5EBL4 403 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 UBXN11Q5T124 520 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 SNX29Q8TEQ0 813 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 CLDND1Q9NY35 253 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 PCDHGC5Q9Y5F6 944 aa19.92■□□□□ 0.78
UPF3A-203ENST00000474056 PP2D1A8MPX8 630 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 INO80B-WBP1J3KQ70 363 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 LAD1O00515 517 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 TSPAN1O60635 241 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 PRPHP41219 470 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 MBTD1Q05BQ5 628 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 POU5F1BQ06416 359 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 CSPP1Q1MSJ5 1256 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 LEXMQ3ZCV2 418 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 LARP1BQ659C4 914 aaKnown RBP19.91■□□□□ 0.78
UPF3A-203ENST00000474056 KCNT2Q6UVM3 1135 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 EP400NLQ6ZTU2 488 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 MCPH1Q8NEM0 835 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.91■□□□□ 0.78
UPF3A-203ENST00000474056 CPB2Q96IY4 423 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 ZNF558Q96NG5 402 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 MRPL9Q9BYD2 267 aaKnown RBP19.91■□□□□ 0.78
UPF3A-203ENST00000474056 PCDHB2Q9Y5E7 798 aa19.91■□□□□ 0.78
UPF3A-203ENST00000474056 ARHGEF35A5YM69 484 aa19.9■□□□□ 0.78
UPF3A-203ENST00000474056 H3BQ06 376 aaPredicted RBP19.9■□□□□ 0.78
UPF3A-203ENST00000474056 ATP2C1P98194 919 aaPredicted RBP19.9■□□□□ 0.78
UPF3A-203ENST00000474056 UBE3AQ05086 875 aa19.9■□□□□ 0.78
UPF3A-203ENST00000474056 AMHR2Q16671 573 aa19.9■□□□□ 0.78
UPF3A-203ENST00000474056 PADI6Q6TGC4 694 aa19.9■□□□□ 0.78
UPF3A-203ENST00000474056 AGMOQ6ZNB7 445 aa19.9■□□□□ 0.78
UPF3A-203ENST00000474056 NFKBIZQ9BYH8 718 aa19.9■□□□□ 0.78
UPF3A-203ENST00000474056 RAB34Q9BZG1 259 aa19.9■□□□□ 0.78
UPF3A-203ENST00000474056 IGFLR1Q9H665 355 aa19.9■□□□□ 0.78
UPF3A-203ENST00000474056 TLR9Q9NR96 1032 aa19.9■□□□□ 0.78
UPF3A-203ENST00000474056 DDX19AQ9NUU7 478 aaKnown RBP19.9■□□□□ 0.78
UPF3A-203ENST00000474056 KIAA1024Q9UPX6 916 aa19.9■□□□□ 0.78
UPF3A-203ENST00000474056 INPP5FQ9Y2H2 1132 aa19.9■□□□□ 0.78
UPF3A-203ENST00000474056 LRRIQ4A6NIV6 560 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 LINC01565O15544 149 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 OFD1O75665 1012 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 CDC25AP30304 524 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 AXLP30530 894 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 LTBRP36941 435 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 ERVFC1P60507 584 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 PLCB3Q01970 1234 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 PCBP1Q15365 356 aaKnown RBP eCLIP19.89■□□□□ 0.77
UPF3A-203ENST00000474056 CTC1Q2NKJ3 1217 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 DTHD1Q6ZMT9 781 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 MRPL10Q7Z7H8 261 aaKnown RBP19.89■□□□□ 0.77
UPF3A-203ENST00000474056 BSNDQ8WZ55 320 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 MRPS27Q92552 414 aaKnown RBP19.89■□□□□ 0.77
UPF3A-203ENST00000474056 PGBD4Q96DM1 585 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 EIF2AQ9BY44 585 aaKnown RBP19.89■□□□□ 0.77
UPF3A-203ENST00000474056 BHMT2Q9H2M3 363 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 TBC1D13Q9NVG8 400 aa19.89■□□□□ 0.77
UPF3A-203ENST00000474056 TRIP11Q15643 1979 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms