RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 CPNE8Q86YQ8 564 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 CCDC60Q8IWA6 550 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 SCYL3Q8IZE3 742 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 ZNF653Q96CK0 615 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 SELENOOQ9BVL4 669 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 THAP2Q9H0W7 228 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 PXMP2Q9NR77 195 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 CYP2C8P10632 490 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 ITGA4P13612 1032 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 GGCXP38435 758 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 SETQ01105 290 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 DHX9Q08211 1270 aaKnown RBP14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 TRAPPC11Q7Z392 1133 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 SLC7A3Q8WY07 619 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 POLR3CQ9BUI4 534 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 TEX13BQ9BXU2 312 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 TTYH3Q9C0H2 523 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 TUFT1Q9NNX1 390 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 NAGPAQ9UK23 515 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 IRF6O14896 467 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 GGPS1O95749 300 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 TCP1P17987 556 aaKnown RBP14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 NPTX2P47972 431 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 NT5C2P49902 561 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 ACTR2P61160 394 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 PLCB3Q01970 1234 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 ORC2Q13416 577 aaPredicted RBP14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 BRD3Q15059 726 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 RSRC2Q7L4I2 434 aaKnown RBP14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 TXLNBQ8N3L3 684 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 TAS1R2Q8TE23 839 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 CPA5Q8WXQ8 436 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 SLC5A5Q92911 643 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 TATDN2Q93075 761 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 HAUS1Q96CS2 278 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 FUT8Q9BYC5 575 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 MTFR1LQ9H019 292 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 SLC9A2Q9UBY0 812 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 AMFRQ9UKV5 643 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 SGPL1O95470 568 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 TERF2Q15554 542 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 SNRNP35Q16560 246 aaKnown RBP14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 HP1BP3Q5SSJ5 553 aaPredicted RBP14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 CFAP58Q5T655 872 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 TMEM130Q8N3G9 435 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 ACSF2Q96CM8 615 aaPredicted RBP14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 CCDC114Q96M63 670 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 ACAD9Q9H845 621 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 SLC38A10Q9HBR0 1119 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 MORC2Q9Y6X9 1032 aaPredicted RBP14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 HSF2BPO75031 334 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 SUPT20HL1Q3ZLR7 823 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 FAM83AQ86UY5 434 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 RHPN2Q8IUC4 686 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 ATP6V0A1Q93050 837 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 TLR10Q9BXR5 811 aa14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 FHDC1Q9C0D6 1143 aaPredicted RBP14.87□□□□□ -0.03
CCDC88A-211ENST00000471947 RNF40O75150 1001 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 MYCP01106 439 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 PIK3CAP42336 1068 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 KCNJ1P48048 391 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 ZCWPW2Q504Y3 356 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 FRMD5Q7Z6J6 570 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 SLC35G2Q8TBE7 412 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 CLEC4DQ8WXI8 215 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 TRIM51Q9BSJ1 452 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 ZNF536O15090 1300 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 PITPNM2Q9BZ72 1349 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 SLCO1A2P46721 670 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 VGLL4Q14135 290 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 FBXO16Q8IX29 292 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 FAM49AQ9H0Q0 323 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 TIAM2Q8IVF5 1701 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 PLIN4Q96Q06 1357 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 ADAMTSL1Q8N6G6 1762 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 CYP3A7-CYP3A51PA0A087WV96 503 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 BUB1BO60566 1050 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 KRT14P02533 472 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 CYP3A7P24462 503 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 EDRF1Q3B7T1 1238 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 WDR44Q5JSH3 913 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 MAP1SQ66K74 1059 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 PHLDB3Q6NSJ2 640 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 SLC47A2Q86VL8 602 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 SMAP1Q8IYB5 467 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 DAW1Q8N136 415 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 ARHGEF26Q96DR7 871 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 ADAM21Q9UKJ8 722 aa14.86□□□□□ -0.03
CCDC88A-211ENST00000471947 GOLGA8SH3BPF8 625 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 MEA1Q16626 185 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 HGSNATQ68CP4 663 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 BTNL9Q6UXG8 535 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 BSNDQ8WZ55 320 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 LPAR1Q92633 364 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 SYNCQ9H7C4 482 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 TBC1D22BQ9NU19 505 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 DDX3XO00571 662 aaKnown RBP eCLIP14.85□□□□□ -0.031e-13■■■■□ 20.8
CCDC88A-211ENST00000471947 ADRB2P07550 413 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 SOX5P35711 763 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms