RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 PFKFB2O60825 505 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PSMA3P25788 255 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 MAGEB10Q96LZ2 347 aaPredicted RBP14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ANTXR1Q9H6X2 564 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PHKA2P46019 1235 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SPP2Q13103 211 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SF3B3Q15393 1217 aaKnown RBP14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 DPCR1Q3MIW9 517 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 RAB42Q8N4Z0 105 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 MYCBPQ99417 103 aaPredicted RBP14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SLFN14P0C7P3 912 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PKN3Q6P5Z2 889 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ZSWIM5Q9P217 1185 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ACAD11Q709F0 780 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 POLR3AO14802 1390 aaPredicted RBP14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SPAG7O75391 227 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 TADA2AO75478 443 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 GPC3P51654 580 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 GPSM2P81274 684 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SWSAP1Q6NVH7 229 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 RGS9BPQ6ZS82 235 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 RPAINQ86UA6 219 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 RNF25Q96BH1 459 aaPredicted RBP14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PPP1R13BQ96KQ4 1090 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 FAM81BQ96LP2 452 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 AK8Q96MA6 479 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 MAGEB5Q9BZ81 275 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ALDH1A1P00352 501 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 KCNA2P16389 499 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PWP1Q13610 501 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PROSER3Q2NL68 480 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SLFN12LQ6IEE8 588 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 APOA5Q6Q788 366 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SEL1LQ9UBV2 794 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 KCNH4Q9UQ05 1017 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 M0QYV0 167 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 LAD1O00515 517 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 GYG2O15488 501 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 VCAM1P19320 739 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 KRT17Q04695 432 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ZNF658Q5TYW1 1059 aaPredicted RBP14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SRRM1Q8IYB3 904 aaKnown RBP14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 DHTKD1Q96HY7 919 aaPredicted RBP14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 DHX35Q9H5Z1 703 aaKnown RBP14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 MED4Q9NPJ6 270 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PCDHA13Q9Y5I0 950 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SLC16A4O15374 487 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 TADA3O75528 432 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 RFX3P48380 749 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 CUL1Q13616 776 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 EFTUD2Q15029 972 aaKnown RBP eCLIP14.06□□□□□ -0.161e-41■■■■■ 62.2
NPHP3-ACAD11-201ENST00000471702 KIF12Q96FN5 646 aa14.06□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 MYO1DO94832 1006 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 FGGP02679 453 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ZNF235Q14590 738 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ADCK5Q3MIX3 580 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ZNF746Q6NUN9 644 aaPredicted RBP14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 DHX36Q9H2U1 1008 aaKnown RBP14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 MAN1B1Q9UKM7 699 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 GFAPP14136 432 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 HSD3B2P26439 372 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PPM1NQ8N819 430 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ACAP3Q96P50 834 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 FOXP1Q9H334 677 aaPredicted RBP14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 KDM4CQ9H3R0 1056 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 APOBEC2Q9Y235 224 aaKnown RBP14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ZNF518AQ6AHZ1 1483 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SERPING1P05155 500 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 NUP62P37198 522 aaPredicted RBP14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ETF1P62495 437 aaKnown RBP14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 RASSF3Q86WH2 238 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 LRRC53A6NM62 1247 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SEC24DO94855 1032 aaPredicted RBP14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ST8SIA6P61647 398 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 TTLL4Q14679 1199 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 HOXC10Q9NYD6 342 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 RASA4BC9J798 803 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 MAPK13O15264 365 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 RASA4O43374 803 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 RAD51Q06609 339 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 WDR75Q8IWA0 830 aaKnown RBP14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 IL17REQ8NFR9 667 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SH3RF3Q8TEJ3 882 aaPredicted RBP14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ELAC2Q9BQ52 826 aaKnown RBP14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ABCC12Q96J65 1359 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 GCFC2P16383 781 aaKnown RBP14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 AIFM3Q96NN9 605 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PITPNM3Q9BZ71 974 aa14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 EIF2AK4Q9P2K8 1649 aaKnown RBP14.05□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PDHA1P08559 390 aa14.04□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 FCER1AP12319 257 aa14.04□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ANKS3Q6ZW76 656 aa14.04□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 RTKN2Q8IZC4 609 aa14.04□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SNX5Q9Y5X3 404 aa14.04□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 TOGARAM2Q6ZUX3 1019 aa14.04□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ZNF589Q86UQ0 364 aaPredicted RBP14.04□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 C1orf131Q8NDD1 294 aaKnown RBP14.04□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 CENPTQ96BT3 561 aa14.04□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SAAL1Q96ER3 474 aa14.04□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 COL17A1Q9UMD9 1497 aaPredicted RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms