RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 H2AFYO75367 372 aaKnown RBP6□□□□□ -1.45
CCDC88A-210ENST00000468534 CD53P19397 219 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 BPIFB4P59827 614 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 DPTQ07507 201 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 ICE2Q659A1 982 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 CCSAPQ6IQ19 270 aaPredicted RBP6□□□□□ -1.45
CCDC88A-210ENST00000468534 GAREM2Q75VX8 874 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 LRP10Q7Z4F1 713 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 ANKRD53Q8N9V6 530 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 OR5AN1Q8NGI8 311 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 THAP3Q8WTV1 239 aaPredicted RBP6□□□□□ -1.45
CCDC88A-210ENST00000468534 RABGGTAQ92696 567 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 NAP1L4Q99733 375 aaKnown RBP6□□□□□ -1.45
CCDC88A-210ENST00000468534 TRIM39Q9HCM9 518 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 TYW1Q9NV66 732 aaKnown RBP6□□□□□ -1.45
CCDC88A-210ENST00000468534 PARPBPQ9NWS1 579 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 AURKAIP1Q9NWT8 199 aaPredicted RBP6□□□□□ -1.45
CCDC88A-210ENST00000468534 CEP72Q9P209 647 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 DENND2AQ9ULE3 1009 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 VWA7Q9Y334 891 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 A0A087X1B8 175 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 RAPGEF3O95398 923 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 PRLP01236 227 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 PDGFRBP09619 1106 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 MAKP20794 623 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 MAN1A1P33908 653 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 ADCY7P51828 1080 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 ANTXR2P58335 489 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 ROM1Q03395 351 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 POU5F1BQ06416 359 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 MAP9Q49MG5 647 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 CC2D1AQ6P1N0 951 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 GET4Q7L5D6 327 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 TMPRSS6Q8IU80 811 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 AMER2Q8N7J2 671 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 LARP4BQ92615 738 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 SLC7A6OSQ96CW6 309 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 SLC39A13Q96H72 371 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 MPHOSPH9Q99550 1183 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 PAGR1Q9BTK6 254 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 ANP32EQ9BTT0 268 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 CHMP4BQ9H444 224 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 NCOA5Q9HCD5 579 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 SAMD15Q9P1V8 674 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 FRMD4BQ9Y2L6 1034 aa5.99□□□□□ -1.45
CCDC88A-210ENST00000468534 PMS2P1A4D2B8 440 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 C2orf78A6NCI8 922 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 GLRX3O76003 335 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 NPTXRO95502 500 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 FGAP02671 866 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 INHBCP55103 352 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 AMPD3Q01432 767 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 TCIRG1Q13488 830 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 SMN1Q16637 294 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 C2orf27AQ580R0 203 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 EFCAB2Q5VUJ9 269 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 PRAMEF9Q5VWM5 478 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 SLFN12LQ6IEE8 588 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 Q6ZRM9 215 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 DDX53Q86TM3 631 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 GFM2Q969S9 779 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 E2F7Q96AV8 911 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 GPHA2Q96T91 129 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 SLC6A15Q9H2J7 730 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 PCIF1Q9H4Z3 704 aa5.98□□□□□ -1.45
CCDC88A-210ENST00000468534 CCDC163A0A0D9SF12 145 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 UBA6A0AVT1 1052 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 KRTAP23-1A1A580 65 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 UBE2QL1A1L167 161 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 DVL2O14641 736 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 RPS6KA4O75676 772 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 SCNN1GP51170 649 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 SESN2P58004 480 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 INHBEP58166 350 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 CNGB1Q14028 1251 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 ELAVL1Q15717 326 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 DGKDQ16760 1214 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 ODR4Q5SWX8 454 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 ZCCHC8Q6NZY4 707 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 ZNF627Q7L945 461 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 OTOP1Q7RTM1 612 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 ANKRD35Q8N283 1001 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 C1orf131Q8NDD1 294 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 LPPQ93052 612 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 PCGF6Q9BYE7 350 aa5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 ZNF703Q9H7S9 590 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-210ENST00000468534 PTPDC1A2A3K4 754 aa5.96□□□□□ -1.46
CCDC88A-210ENST00000468534 KCNQ2O43526 872 aa5.96□□□□□ -1.46
CCDC88A-210ENST00000468534 DHX16O60231 1041 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-210ENST00000468534 MAFO75444 373 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-210ENST00000468534 LDHAP00338 332 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-210ENST00000468534 VDRP11473 427 aa5.96□□□□□ -1.46
CCDC88A-210ENST00000468534 FNTBP49356 437 aa5.96□□□□□ -1.46
CCDC88A-210ENST00000468534 MECP2P51608 486 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-210ENST00000468534 ARHGAP44Q17R89 818 aa5.96□□□□□ -1.46
CCDC88A-210ENST00000468534 KRT40Q6A162 431 aa5.96□□□□□ -1.46
CCDC88A-210ENST00000468534 LDLRAD3Q86YD5 345 aa5.96□□□□□ -1.46
CCDC88A-210ENST00000468534 CREBRFQ8IUR6 639 aa5.96□□□□□ -1.46
CCDC88A-210ENST00000468534 LILRB2Q8N423 598 aa5.96□□□□□ -1.46
CCDC88A-210ENST00000468534 PDILTQ8N807 584 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms