RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 MUC6Q6W4X9 2439 aa27.4■■□□□ 1.98
PTCH1-210ENST00000468211 WNT7AO00755 349 aa27.39■■□□□ 1.98
PTCH1-210ENST00000468211 KRT2P35908 639 aa27.39■■□□□ 1.98
PTCH1-210ENST00000468211 POLGP54098 1239 aaPredicted RBP27.39■■□□□ 1.98
PTCH1-210ENST00000468211 CTTNQ14247 550 aaKnown RBP27.39■■□□□ 1.98
PTCH1-210ENST00000468211 NSUN7Q8NE18 718 aaKnown RBP27.39■■□□□ 1.98
PTCH1-210ENST00000468211 SLC7A3Q8WY07 619 aa27.39■■□□□ 1.98
PTCH1-210ENST00000468211 SUSD6Q92537 303 aa27.39■■□□□ 1.98
PTCH1-210ENST00000468211 WASF1Q92558 559 aa27.39■■□□□ 1.98
PTCH1-210ENST00000468211 MRPL9Q9BYD2 267 aaKnown RBP27.39■■□□□ 1.98
PTCH1-210ENST00000468211 S1PR5Q9H228 398 aa27.39■■□□□ 1.98
PTCH1-210ENST00000468211 FAM105AQ9NUU6 356 aa27.39■■□□□ 1.98
PTCH1-210ENST00000468211 MARCH6O60337 910 aa27.38■■□□□ 1.97
PTCH1-210ENST00000468211 DKC1O60832 514 aaKnown RBP eCLIP27.38■■□□□ 1.97
PTCH1-210ENST00000468211 YWHABP31946 246 aaKnown RBP27.38■■□□□ 1.97
PTCH1-210ENST00000468211 TECP42680 631 aa27.38■■□□□ 1.97
PTCH1-210ENST00000468211 FOSBP53539 338 aa27.38■■□□□ 1.97
PTCH1-210ENST00000468211 CYP4A11Q02928 519 aa27.38■■□□□ 1.97
PTCH1-210ENST00000468211 ANKRD54Q6NXT1 300 aa27.38■■□□□ 1.97
PTCH1-210ENST00000468211 SYCE2Q6PIF2 218 aa27.38■■□□□ 1.97
PTCH1-210ENST00000468211 NAP1L4Q99733 375 aaKnown RBP27.38■■□□□ 1.97
PTCH1-210ENST00000468211 APOL5Q9BWW9 433 aa27.38■■□□□ 1.97
PTCH1-210ENST00000468211 C2orf71A6NGG8 1288 aa27.37■■□□□ 1.97
PTCH1-210ENST00000468211 B4GALT3O60512 393 aa27.37■■□□□ 1.97
PTCH1-210ENST00000468211 JAK2O60674 1132 aa27.37■■□□□ 1.97
PTCH1-210ENST00000468211 SRGAP2CP0DJJ0 459 aa27.37■■□□□ 1.97
PTCH1-210ENST00000468211 LAMTOR4Q0VGL1 99 aa27.37■■□□□ 1.97
PTCH1-210ENST00000468211 ST3GAL1Q11201 340 aa27.37■■□□□ 1.97
PTCH1-210ENST00000468211 MRPL43Q8N983 215 aaKnown RBP27.37■■□□□ 1.97
PTCH1-210ENST00000468211 BCL7CQ8WUZ0 217 aaPredicted RBP27.37■■□□□ 1.97
PTCH1-210ENST00000468211 PHF7Q9BWX1 381 aaPredicted RBP27.37■■□□□ 1.97
PTCH1-210ENST00000468211 AGPAT5Q9NUQ2 364 aa27.37■■□□□ 1.97
PTCH1-210ENST00000468211 TBC1D13Q9NVG8 400 aa27.37■■□□□ 1.97
PTCH1-210ENST00000468211 INPP5FQ9Y2H2 1132 aa27.37■■□□□ 1.97
PTCH1-210ENST00000468211 ZNF318Q5VUA4 2279 aa27.37■■□□□ 1.97
PTCH1-210ENST00000468211 FSD2A1L4K1 749 aa27.36■■□□□ 1.97
PTCH1-210ENST00000468211 ZNF623O75123 536 aa27.36■■□□□ 1.97
PTCH1-210ENST00000468211 ZC3H11AO75152 810 aaKnown RBP eCLIP27.36■■□□□ 1.97
PTCH1-210ENST00000468211 OFD1O75665 1012 aa27.36■■□□□ 1.97
PTCH1-210ENST00000468211 SLITRK3O94933 977 aa27.36■■□□□ 1.97
PTCH1-210ENST00000468211 RFC5P40937 340 aa27.36■■□□□ 1.97
PTCH1-210ENST00000468211 ALDH7A1P49419 539 aaKnown RBP27.36■■□□□ 1.97
PTCH1-210ENST00000468211 CBX2Q14781 532 aaPredicted RBP27.36■■□□□ 1.97
PTCH1-210ENST00000468211 EMC2Q15006 297 aa27.36■■□□□ 1.97
PTCH1-210ENST00000468211 XKR9Q5GH70 373 aa27.36■■□□□ 1.97
PTCH1-210ENST00000468211 SLFN12Q8IYM2 578 aa27.36■■□□□ 1.97
PTCH1-210ENST00000468211 PSPC1Q8WXF1 523 aaKnown RBP27.36■■□□□ 1.97
PTCH1-210ENST00000468211 RPGRIP1Q96KN7 1286 aa27.36■■□□□ 1.97
PTCH1-210ENST00000468211 NRDE2Q9H7Z3 1164 aa27.36■■□□□ 1.97
PTCH1-210ENST00000468211 CDH22Q9UJ99 828 aa27.36■■□□□ 1.97
PTCH1-210ENST00000468211 BTBD18B2RXH4 712 aa27.35■■□□□ 1.97
PTCH1-210ENST00000468211 SEC24BO95487 1268 aa27.35■■□□□ 1.97
PTCH1-210ENST00000468211 HOXA11P31270 313 aaPredicted RBP27.35■■□□□ 1.97
PTCH1-210ENST00000468211 SMC1AQ14683 1233 aaKnown RBP27.35■■□□□ 1.97
PTCH1-210ENST00000468211 NOMO2Q5JPE7 1267 aa27.35■■□□□ 1.97
PTCH1-210ENST00000468211 UBXN11Q5T124 520 aa27.35■■□□□ 1.97
PTCH1-210ENST00000468211 GLB1LQ6UWU2 654 aa27.35■■□□□ 1.97
PTCH1-210ENST00000468211 HFE2Q6ZVN8 426 aa27.35■■□□□ 1.97
PTCH1-210ENST00000468211 TPH2Q8IWU9 490 aa27.35■■□□□ 1.97
PTCH1-210ENST00000468211 ZSWIM4Q9H7M6 989 aa27.35■■□□□ 1.97
PTCH1-210ENST00000468211 XPNPEP1Q9NQW7 623 aa27.35■■□□□ 1.97
PTCH1-210ENST00000468211 DNAJB4Q9UDY4 337 aa27.35■■□□□ 1.97
PTCH1-210ENST00000468211 PPME1Q9Y570 386 aa27.35■■□□□ 1.97
PTCH1-210ENST00000468211 PCDHB2Q9Y5E7 798 aa27.35■■□□□ 1.97
PTCH1-210ENST00000468211 BAG4O95429 457 aaKnown RBP27.34■■□□□ 1.97
PTCH1-210ENST00000468211 SKIP12755 728 aa27.34■■□□□ 1.97
PTCH1-210ENST00000468211 RAB27AP51159 221 aa27.34■■□□□ 1.97
PTCH1-210ENST00000468211 AFF1P51825 1210 aaKnown RBP27.34■■□□□ 1.97
PTCH1-210ENST00000468211 NEK4P51957 841 aa27.34■■□□□ 1.97
PTCH1-210ENST00000468211 AGMOQ6ZNB7 445 aa27.34■■□□□ 1.97
PTCH1-210ENST00000468211 SRGAP1Q7Z6B7 1085 aa27.34■■□□□ 1.97
PTCH1-210ENST00000468211 FERMT3Q86UX7 667 aa27.34■■□□□ 1.97
PTCH1-210ENST00000468211 AUTS2Q8WXX7 1259 aa27.34■■□□□ 1.97
PTCH1-210ENST00000468211 EIF2AK1Q9BQI3 630 aaKnown RBP27.34■■□□□ 1.97
PTCH1-210ENST00000468211 HCFC2Q9Y5Z7 792 aa27.34■■□□□ 1.97
PTCH1-210ENST00000468211 WDFY4Q6ZS81 3184 aa27.33■■□□□ 1.97
PTCH1-210ENST00000468211 CLASP2O75122 1294 aaKnown RBP27.33■■□□□ 1.97
PTCH1-210ENST00000468211 GALTP07902 379 aa27.33■■□□□ 1.97
PTCH1-210ENST00000468211 OTUD6AQ7L8S5 288 aa27.33■■□□□ 1.97
PTCH1-210ENST00000468211 ZNF280BQ86YH2 543 aa27.33■■□□□ 1.97
PTCH1-210ENST00000468211 DIS3L2Q8IYB7 885 aaKnown RBP27.33■■□□□ 1.97
PTCH1-210ENST00000468211 RNF149Q8NC42 400 aa27.33■■□□□ 1.97
PTCH1-210ENST00000468211 EDAQ92838 391 aa27.33■■□□□ 1.97
PTCH1-210ENST00000468211 TMEM169Q96HH4 297 aa27.33■■□□□ 1.97
PTCH1-210ENST00000468211 BRMS1Q9HCU9 246 aa27.33■■□□□ 1.97
PTCH1-210ENST00000468211 CXCL14O95715 111 aa27.32■■□□□ 1.96
PTCH1-210ENST00000468211 SRGAP2BP0DMP2 458 aa27.32■■□□□ 1.96
PTCH1-210ENST00000468211 CALCRLQ16602 461 aa27.32■■□□□ 1.96
PTCH1-210ENST00000468211 MRPL10Q7Z7H8 261 aaKnown RBP27.32■■□□□ 1.96
PTCH1-210ENST00000468211 EXOC8Q8IYI6 725 aa27.32■■□□□ 1.96
PTCH1-210ENST00000468211 VPS52Q8N1B4 723 aa27.32■■□□□ 1.96
PTCH1-210ENST00000468211 IGSF21Q96ID5 467 aa27.32■■□□□ 1.96
PTCH1-210ENST00000468211 HSD17B14Q9BPX1 270 aa27.32■■□□□ 1.96
PTCH1-210ENST00000468211 VN1R3Q9BXE9 311 aa27.32■■□□□ 1.96
PTCH1-210ENST00000468211 GBP3Q9H0R5 595 aa27.32■■□□□ 1.96
PTCH1-210ENST00000468211 ZBP1Q9H171 429 aa27.32■■□□□ 1.96
PTCH1-210ENST00000468211 PCDHA12Q9UN75 941 aa27.32■■□□□ 1.96
PTCH1-210ENST00000468211 SLC11A1P49279 550 aa27.31■■□□□ 1.96
PTCH1-210ENST00000468211 TCP11Q8WWU5 503 aa27.31■■□□□ 1.96
PTCH1-210ENST00000468211 MTRQ99707 1265 aa27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms