RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 SUSD6Q92537 303 aa21.43■■□□□ 1.02
COL9A3-206ENST00000466532 RPGRIP1Q96KN7 1286 aa21.43■■□□□ 1.02
COL9A3-206ENST00000466532 DHX33Q9H6R0 707 aaKnown RBP21.43■■□□□ 1.02
COL9A3-206ENST00000466532 IFT122Q9HBG6 1241 aa21.43■■□□□ 1.02
COL9A3-206ENST00000466532 BMP2KQ9NSY1 1161 aaPredicted RBP21.43■■□□□ 1.02
COL9A3-206ENST00000466532 PPME1Q9Y570 386 aa21.43■■□□□ 1.02
COL9A3-206ENST00000466532 ZNF318Q5VUA4 2279 aa21.43■■□□□ 1.02
COL9A3-206ENST00000466532 ZC3H11AO75152 810 aaKnown RBP eCLIP21.42■■□□□ 1.023e-8■■□□□ 14.2
COL9A3-206ENST00000466532 BAG4O95429 457 aaKnown RBP21.42■■□□□ 1.02
COL9A3-206ENST00000466532 CA8P35219 290 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 RFC5P40937 340 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 RAB27AP51159 221 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 NR5A1Q13285 461 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 CBX2Q14781 532 aaPredicted RBP21.42■■□□□ 1.02
COL9A3-206ENST00000466532 GLB1LQ6UWU2 654 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 MUC6Q6W4X9 2439 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 SLFN12Q8IYM2 578 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 NECAB1Q8N987 351 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 PRPF31Q8WWY3 499 aaKnown RBP21.42■■□□□ 1.02
COL9A3-206ENST00000466532 PSPC1Q8WXF1 523 aaKnown RBP21.42■■□□□ 1.02
COL9A3-206ENST00000466532 EDAQ92838 391 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 TMEM143Q96AN5 459 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 TMEM169Q96HH4 297 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 DYDC2Q96IM9 177 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 APOL5Q9BWW9 433 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 BRMS1Q9HCU9 246 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 AGPAT5Q9NUQ2 364 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 RGL1Q9NZL6 768 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 INPP5FQ9Y2H2 1132 aa21.42■■□□□ 1.02
COL9A3-206ENST00000466532 C2orf71A6NGG8 1288 aa21.41■■□□□ 1.02
COL9A3-206ENST00000466532 MEIS3P2A8K0S8 358 aa21.41■■□□□ 1.02
COL9A3-206ENST00000466532 SRGAP2CP0DJJ0 459 aa21.41■■□□□ 1.02
COL9A3-206ENST00000466532 FDPSP14324 419 aaKnown RBP21.41■■□□□ 1.02
COL9A3-206ENST00000466532 YWHABP31946 246 aaKnown RBP21.41■■□□□ 1.02
COL9A3-206ENST00000466532 CYP4A11Q02928 519 aa21.41■■□□□ 1.02
COL9A3-206ENST00000466532 SPIRE1Q08AE8 756 aa21.41■■□□□ 1.02
COL9A3-206ENST00000466532 ME3Q16798 604 aa21.41■■□□□ 1.02
COL9A3-206ENST00000466532 XKR9Q5GH70 373 aa21.41■■□□□ 1.02
COL9A3-206ENST00000466532 SYCE2Q6PIF2 218 aa21.41■■□□□ 1.02
COL9A3-206ENST00000466532 HFE2Q6ZVN8 426 aa21.41■■□□□ 1.02
COL9A3-206ENST00000466532 OTUD6AQ7L8S5 288 aa21.41■■□□□ 1.02
COL9A3-206ENST00000466532 MRPL43Q8N983 215 aaKnown RBP21.41■■□□□ 1.02
COL9A3-206ENST00000466532 S1PR5Q9H228 398 aa21.41■■□□□ 1.02
COL9A3-206ENST00000466532 TBC1D13Q9NVG8 400 aa21.41■■□□□ 1.02
COL9A3-206ENST00000466532 PPP4R2Q9NY27 417 aa21.41■■□□□ 1.02
COL9A3-206ENST00000466532 ZNF623O75123 536 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 LARGE1O95461 756 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 RNASELQ05823 741 aaKnown RBP21.4■■□□□ 1.02
COL9A3-206ENST00000466532 LAMTOR4Q0VGL1 99 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 CTTNQ14247 550 aaKnown RBP21.4■■□□□ 1.02
COL9A3-206ENST00000466532 BMS1Q14692 1282 aaKnown RBP21.4■■□□□ 1.02
COL9A3-206ENST00000466532 EMC2Q15006 297 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 NOMO2Q5JPE7 1267 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 SRGAP1Q7Z6B7 1085 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 TCP11Q8WWU5 503 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 CASP10Q92851 521 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 TNFRSF25Q93038 417 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 GTF3C6Q969F1 213 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 PGBD4Q96DM1 585 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 ZSWIM4Q9H7M6 989 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 NRDE2Q9H7Z3 1164 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 PCDHB2Q9Y5E7 798 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 HCFC2Q9Y5Z7 792 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 MYO10Q9HD67 2058 aa21.4■■□□□ 1.02
COL9A3-206ENST00000466532 CARNS1A5YM72 827 aa21.39■■□□□ 1.01
COL9A3-206ENST00000466532 GAS2O43903 313 aaKnown RBP21.39■■□□□ 1.01
COL9A3-206ENST00000466532 OFD1O75665 1012 aa21.39■■□□□ 1.01
COL9A3-206ENST00000466532 HOXB8P17481 243 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-206ENST00000466532 HOXD11P31277 338 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-206ENST00000466532 TMEM173Q86WV6 379 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-206ENST00000466532 MINDY3Q9H8M7 445 aa21.39■■□□□ 1.01
COL9A3-206ENST00000466532 KMT2EQ8IZD2 1858 aa21.39■■□□□ 1.01
COL9A3-206ENST00000466532 ZBTB39O15060 712 aa21.38■■□□□ 1.01
COL9A3-206ENST00000466532 CLASP2O75122 1294 aaKnown RBP21.38■■□□□ 1.01
COL9A3-206ENST00000466532 CXCL14O95715 111 aa21.38■■□□□ 1.01
COL9A3-206ENST00000466532 FERMT3Q86UX7 667 aa21.38■■□□□ 1.01
COL9A3-206ENST00000466532 TPH2Q8IWU9 490 aa21.38■■□□□ 1.01
COL9A3-206ENST00000466532 VPS52Q8N1B4 723 aa21.38■■□□□ 1.01
COL9A3-206ENST00000466532 NSUN7Q8NE18 718 aaKnown RBP21.38■■□□□ 1.01
COL9A3-206ENST00000466532 IGSF21Q96ID5 467 aa21.38■■□□□ 1.01
COL9A3-206ENST00000466532 MFSD14AQ96MC6 490 aa21.38■■□□□ 1.01
COL9A3-206ENST00000466532 MTRQ99707 1265 aa21.38■■□□□ 1.01
COL9A3-206ENST00000466532 GBP3Q9H0R5 595 aa21.38■■□□□ 1.01
COL9A3-206ENST00000466532 ZBP1Q9H171 429 aa21.38■■□□□ 1.01
COL9A3-206ENST00000466532 DENND4AQ7Z401 1863 aa21.37■■□□□ 1.01
COL9A3-206ENST00000466532 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.37■■□□□ 1.01
COL9A3-206ENST00000466532 ASAP2O43150 1006 aa21.37■■□□□ 1.01
COL9A3-206ENST00000466532 SLITRK3O94933 977 aa21.37■■□□□ 1.01
COL9A3-206ENST00000466532 GALTP07902 379 aa21.37■■□□□ 1.01
COL9A3-206ENST00000466532 FOSBP53539 338 aa21.37■■□□□ 1.01
COL9A3-206ENST00000466532 ZXDAP98168 799 aa21.37■■□□□ 1.01
COL9A3-206ENST00000466532 CALCRLQ16602 461 aa21.37■■□□□ 1.01
COL9A3-206ENST00000466532 TPRNQ4KMQ1 711 aa21.37■■□□□ 1.01
COL9A3-206ENST00000466532 AGMOQ6ZNB7 445 aa21.37■■□□□ 1.01
COL9A3-206ENST00000466532 TRIM67Q6ZTA4 783 aa21.37■■□□□ 1.01
COL9A3-206ENST00000466532 DDX53Q86TM3 631 aaKnown RBP21.37■■□□□ 1.01
COL9A3-206ENST00000466532 RNF149Q8NC42 400 aa21.37■■□□□ 1.01
COL9A3-206ENST00000466532 URGCPQ8TCY9 931 aa21.37■■□□□ 1.01
COL9A3-206ENST00000466532 AUTS2Q8WXX7 1259 aa21.37■■□□□ 1.01
COL9A3-206ENST00000466532 EIF2AK1Q9BQI3 630 aaKnown RBP21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms