RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 CEP170P1Q96L14 293 aa17.23■□□□□ 0.35
SKA3-204ENST00000462482 DZANK1Q9NVP4 752 aa17.23■□□□□ 0.35
SKA3-204ENST00000462482 KCNJ14Q9UNX9 436 aa17.23■□□□□ 0.35
SKA3-204ENST00000462482 COL4A3BPQ9Y5P4 624 aa17.23■□□□□ 0.35
SKA3-204ENST00000462482 HCFC2Q9Y5Z7 792 aa17.23■□□□□ 0.35
SKA3-204ENST00000462482 SPDYE4A6NLX3 237 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 CCNT1O60563 726 aaKnown RBP17.22■□□□□ 0.35
SKA3-204ENST00000462482 STBD1O95210 358 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 BAG4O95429 457 aaKnown RBP17.22■□□□□ 0.35
SKA3-204ENST00000462482 RFC5P40937 340 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 PTPN5P54829 565 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 PPP2R5CQ13362 524 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 LONRF3Q496Y0 759 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 PLA2G4FQ68DD2 849 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 PPP4R3AQ6IN85 833 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 TCP11Q8WWU5 503 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 WASF1Q92558 559 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 LPPQ93052 612 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 AIFM3Q96NN9 605 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 FAM193BQ96PV7 902 aaPredicted RBP17.22■□□□□ 0.35
SKA3-204ENST00000462482 CEP89Q96ST8 783 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 GBP3Q9H0R5 595 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 ADAM7Q9H2U9 754 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 BRMS1Q9HCU9 246 aa17.22■□□□□ 0.35
SKA3-204ENST00000462482 TBX3O15119 743 aa17.21■□□□□ 0.35
SKA3-204ENST00000462482 SLC37A4O43826 429 aa17.21■□□□□ 0.35
SKA3-204ENST00000462482 GAS2O43903 313 aaKnown RBP17.21■□□□□ 0.35
SKA3-204ENST00000462482 CLASP2O75122 1294 aaKnown RBP17.21■□□□□ 0.35
SKA3-204ENST00000462482 ZNF623O75123 536 aa17.21■□□□□ 0.35
SKA3-204ENST00000462482 SP100P23497 879 aaPredicted RBP17.21■□□□□ 0.35
SKA3-204ENST00000462482 NCBP1Q09161 790 aaKnown RBP17.21■□□□□ 0.35
SKA3-204ENST00000462482 SRGAP1Q7Z6B7 1085 aa17.21■□□□□ 0.35
SKA3-204ENST00000462482 DDX53Q86TM3 631 aaKnown RBP17.21■□□□□ 0.35
SKA3-204ENST00000462482 PPFIBP1Q86W92 1011 aa17.21■□□□□ 0.35
SKA3-204ENST00000462482 KSR1Q8IVT5 923 aa17.21■□□□□ 0.35
SKA3-204ENST00000462482 IGSF21Q96ID5 467 aa17.21■□□□□ 0.35
SKA3-204ENST00000462482 PHF20Q9BVI0 1012 aa17.21■□□□□ 0.35
SKA3-204ENST00000462482 KCNMB3Q9NPA1 279 aa17.21■□□□□ 0.35
SKA3-204ENST00000462482 TBC1D13Q9NVG8 400 aa17.21■□□□□ 0.35
SKA3-204ENST00000462482 KANSL3Q9P2N6 904 aa17.21■□□□□ 0.35
SKA3-204ENST00000462482 PCDHB2Q9Y5E7 798 aa17.21■□□□□ 0.35
SKA3-204ENST00000462482 STK36Q9NRP7 1315 aa17.21■□□□□ 0.34
SKA3-204ENST00000462482 EML1O00423 815 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 ASAP2O43150 1006 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 SRGAP2CP0DJJ0 459 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 CTSAP10619 480 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 NPEPPSP55786 919 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 EPHA7Q15375 998 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 NPY5RQ15761 445 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 ATAT1Q5SQI0 421 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 RARS2Q5T160 578 aaKnown RBP17.2■□□□□ 0.34
SKA3-204ENST00000462482 PIK3AP1Q6ZUJ8 805 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 SLFN12Q8IYM2 578 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 PRPF31Q8WWY3 499 aaKnown RBP17.2■□□□□ 0.34
SKA3-204ENST00000462482 ZBP1Q9H171 429 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 NRDE2Q9H7Z3 1164 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 AGPAT5Q9NUQ2 364 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 VAV3Q9UKW4 847 aa17.2■□□□□ 0.34
SKA3-204ENST00000462482 MUC6Q6W4X9 2439 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 OFD1O75665 1012 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 ERLIN2O94905 339 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 GALTP07902 379 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 YWHABP31946 246 aaKnown RBP17.19■□□□□ 0.34
SKA3-204ENST00000462482 SCRN1Q12765 414 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 MTMR3Q13615 1198 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 ANKRD1Q15327 319 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 XKR9Q5GH70 373 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 NCAPH2Q6IBW4 605 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 CABP7Q86V35 215 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 C4orf19Q8IY42 314 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 UBALD2Q8IYN6 164 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 CNNM3Q8NE01 707 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 TMEM143Q96AN5 459 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 CCDC43Q96MW1 224 aaKnown RBP17.19■□□□□ 0.34
SKA3-204ENST00000462482 LXNQ9BS40 222 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 EMILIN2Q9BXX0 1053 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 IRF2BPLQ9H1B7 796 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 DHX33Q9H6R0 707 aaKnown RBP17.19■□□□□ 0.34
SKA3-204ENST00000462482 ZSWIM4Q9H7M6 989 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 RSAD1Q9HA92 442 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 UBN1Q9NPG3 1134 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 DBR1Q9UK59 544 aaKnown RBP17.19■□□□□ 0.34
SKA3-204ENST00000462482 IRAK3Q9Y616 596 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 KIAA1671Q9BY89 1806 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 CNTNAP2Q9UHC6 1331 aa17.19■□□□□ 0.34
SKA3-204ENST00000462482 PFKFB2O60825 505 aa17.18■□□□□ 0.34
SKA3-204ENST00000462482 ALDH2P05091 517 aa17.18■□□□□ 0.34
SKA3-204ENST00000462482 NEFLP07196 543 aa17.18■□□□□ 0.34
SKA3-204ENST00000462482 LAMTOR4Q0VGL1 99 aa17.18■□□□□ 0.34
SKA3-204ENST00000462482 ELMSAN1Q6PJG2 1045 aa17.18■□□□□ 0.34
SKA3-204ENST00000462482 TDRD5Q8NAT2 981 aaKnown RBP17.18■□□□□ 0.34
SKA3-204ENST00000462482 KREMEN2Q8NCW0 462 aa17.18■□□□□ 0.34
SKA3-204ENST00000462482 AUTS2Q8WXX7 1259 aa17.18■□□□□ 0.34
SKA3-204ENST00000462482 POMKQ9H5K3 350 aa17.18■□□□□ 0.34
SKA3-204ENST00000462482 IFT122Q9HBG6 1241 aa17.18■□□□□ 0.34
SKA3-204ENST00000462482 ORC3Q9UBD5 711 aaPredicted RBP17.18■□□□□ 0.34
SKA3-204ENST00000462482 SORCS3Q9UPU3 1222 aa17.18■□□□□ 0.34
SKA3-204ENST00000462482 NR1I2O75469 434 aa17.17■□□□□ 0.34
SKA3-204ENST00000462482 KRT2P35908 639 aa17.17■□□□□ 0.34
SKA3-204ENST00000462482 SLC11A1P49279 550 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms