RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 ERLIN2O94905 339 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 LYPLA2O95372 231 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 SRGAP2CP0DJJ0 459 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 SRGAP2BP0DMP2 458 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 ATP2B1P20020 1258 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 MCM7P33993 719 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 PBX3P40426 434 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 PLCB3Q01970 1234 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 KRT17Q04695 432 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 LAMTOR4Q0VGL1 99 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 ADAM15Q13444 863 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 GLB1LQ6UWU2 654 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 RBM23Q86U06 439 aaKnown RBP15.55■□□□□ 0.08
USP4-206ENST00000461553 FERMT3Q86UX7 667 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 RNF149Q8NC42 400 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 MTMR9Q96QG7 549 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 CDCA3Q99618 268 aaPredicted RBP15.55■□□□□ 0.08
USP4-206ENST00000461553 TCF25Q9BQ70 676 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 TLE6Q9H808 572 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 CARNS1A5YM72 827 aa15.54■□□□□ 0.08
USP4-206ENST00000461553 FSCN2O14926 492 aa15.54■□□□□ 0.08
USP4-206ENST00000461553 MBTPS2O43462 519 aa15.54■□□□□ 0.08
USP4-206ENST00000461553 ZC3H11AO75152 810 aaKnown RBP eCLIP15.54■□□□□ 0.08
USP4-206ENST00000461553 DGAT1O75907 488 aa15.54■□□□□ 0.08
USP4-206ENST00000461553 SLITRK3O94933 977 aa15.54■□□□□ 0.08
USP4-206ENST00000461553 ZP2Q05996 745 aa15.54■□□□□ 0.08
USP4-206ENST00000461553 ORC2Q13416 577 aaPredicted RBP15.54■□□□□ 0.08
USP4-206ENST00000461553 TFDP1Q14186 410 aa15.54■□□□□ 0.08
USP4-206ENST00000461553 MXD4Q14582 209 aaPredicted RBP15.54■□□□□ 0.08
USP4-206ENST00000461553 SMAD2Q15796 467 aaKnown RBP15.54■□□□□ 0.08
USP4-206ENST00000461553 LPPQ93052 612 aa15.54■□□□□ 0.08
USP4-206ENST00000461553 PGBD4Q96DM1 585 aa15.54■□□□□ 0.08
USP4-206ENST00000461553 POP1Q99575 1024 aaKnown RBP15.54■□□□□ 0.08
USP4-206ENST00000461553 FOXP1Q9H334 677 aaPredicted RBP15.54■□□□□ 0.08
USP4-206ENST00000461553 ANKEF1Q9NU02 776 aa15.54■□□□□ 0.08
USP4-206ENST00000461553 SPG21Q9NZD8 308 aa15.54■□□□□ 0.08
USP4-206ENST00000461553 BARX2Q9UMQ3 279 aaPredicted RBP15.54■□□□□ 0.08
USP4-206ENST00000461553 INPP5FQ9Y2H2 1132 aa15.54■□□□□ 0.08
USP4-206ENST00000461553 ZBTB39O15060 712 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 OR52Z1P0C646 297 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 ALDH7A1P49419 539 aaKnown RBP15.53■□□□□ 0.08
USP4-206ENST00000461553 ERVFC1P60507 584 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 RNASELQ05823 741 aaKnown RBP15.53■□□□□ 0.08
USP4-206ENST00000461553 DUSP6Q16828 381 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 ADHFE1Q8IWW8 467 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 SLC39A11Q8N1S5 342 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 URGCPQ8TCY9 931 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 TMEM169Q96HH4 297 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 KIF2CQ99661 725 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 HSD17B14Q9BPX1 270 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 TMEM60Q9H2L4 133 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 MINDY3Q9H8M7 445 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 NGRNQ9NPE2 291 aaKnown RBP15.53■□□□□ 0.08
USP4-206ENST00000461553 CD320Q9NPF0 282 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 XPNPEP1Q9NQW7 623 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 NOL7Q9UMY1 257 aaKnown RBP15.53■□□□□ 0.08
USP4-206ENST00000461553 MYH11P35749 1972 aa15.53■□□□□ 0.08
USP4-206ENST00000461553 CNTNAP2Q9UHC6 1331 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 USO1O60763 962 aaKnown RBP15.52■□□□□ 0.08
USP4-206ENST00000461553 ZNF623O75123 536 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 GLP2RO95838 553 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 COL9A1P20849 921 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 RBM25P49756 843 aaKnown RBP15.52■□□□□ 0.08
USP4-206ENST00000461553 RARRES1P49788 294 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 BCAR1P56945 870 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 COASYQ13057 564 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 BMS1Q14692 1282 aaKnown RBP15.52■□□□□ 0.08
USP4-206ENST00000461553 RABEP1Q15276 862 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 PCBP1Q15365 356 aaKnown RBP eCLIP15.52■□□□□ 0.08
USP4-206ENST00000461553 LONRF3Q496Y0 759 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 NOMO2Q5JPE7 1267 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 TTC38Q5R3I4 469 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 SMRP1Q8NCR6 262 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 FBXO18Q8NFZ0 1043 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 ERMNQ8TAM6 284 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 MSLNLQ96KJ4 702 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 EPHX3Q9H6B9 360 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 TUFT1Q9NNX1 390 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 TBC1D13Q9NVG8 400 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 PCDHB2Q9Y5E7 798 aa15.52■□□□□ 0.08
USP4-206ENST00000461553 INO80B-WBP1J3KQ70 363 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 PER2O15055 1255 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 ST18O60284 1047 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 EYA4O95677 639 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 CA8P35219 290 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 TRAPPC10P48553 1259 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 PTENP60484 403 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 CAPSQ13938 189 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 SMC1AQ14683 1233 aaKnown RBP15.51■□□□□ 0.07
USP4-206ENST00000461553 TMEM31Q5JXX7 168 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 HAUS3Q68CZ6 603 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 NOTUMQ6P988 496 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 TMC7Q7Z402 723 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 NOSTRINQ8IVI9 506 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 PIGOQ8TEQ8 1089 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 KHSRPQ92945 711 aaKnown RBP eCLIP15.51■□□□□ 0.07
USP4-206ENST00000461553 CCDC51Q96ER9 411 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 POLR3FQ9H1D9 316 aaPredicted RBP15.51■□□□□ 0.07
USP4-206ENST00000461553 RSAD1Q9HA92 442 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 UPF2Q9HAU5 1272 aaKnown RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms