RNA–Protein interactions for RNA: ENST00000461328.1

VARS-219, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-219ENST00000461328 TFDP1Q14186 410 aa17.1■□□□□ 0.33
VARS-219ENST00000461328 LEXMQ3ZCV2 418 aa17.1■□□□□ 0.33
VARS-219ENST00000461328 BRAPQ7Z569 592 aa17.1■□□□□ 0.33
VARS-219ENST00000461328 SRGAP1Q7Z6B7 1085 aa17.1■□□□□ 0.33
VARS-219ENST00000461328 FERMT3Q86UX7 667 aa17.1■□□□□ 0.33
VARS-219ENST00000461328 THNSL1Q8IYQ7 743 aa17.1■□□□□ 0.33
VARS-219ENST00000461328 LRRC43Q8N309 656 aa17.1■□□□□ 0.33
VARS-219ENST00000461328 COLGALT1Q8NBJ5 622 aa17.1■□□□□ 0.33
VARS-219ENST00000461328 RNF149Q8NC42 400 aa17.1■□□□□ 0.33
VARS-219ENST00000461328 PPP2R3CQ969Q6 453 aa17.1■□□□□ 0.33
VARS-219ENST00000461328 IFT122Q9HBG6 1241 aa17.1■□□□□ 0.33
VARS-219ENST00000461328 XPNPEP1Q9NQW7 623 aa17.1■□□□□ 0.33
VARS-219ENST00000461328 CLDND1Q9NY35 253 aa17.1■□□□□ 0.33
VARS-219ENST00000461328 TCF20Q9UGU0 1960 aaKnown RBP17.09■□□□□ 0.33
VARS-219ENST00000461328 TTC28Q96AY4 2481 aa17.09■□□□□ 0.33
VARS-219ENST00000461328 XIRP2A4UGR9 3374 aa17.09■□□□□ 0.33
VARS-219ENST00000461328 FGF18O76093 207 aa17.09■□□□□ 0.33
VARS-219ENST00000461328 XRCC6P12956 609 aaKnown RBP eCLIP17.09■□□□□ 0.338e-6■■□□□ 12.6
VARS-219ENST00000461328 HYAL1Q12794 435 aa17.09■□□□□ 0.33
VARS-219ENST00000461328 CAMK1Q14012 370 aa17.09■□□□□ 0.33
VARS-219ENST00000461328 MXD4Q14582 209 aaPredicted RBP17.09■□□□□ 0.33
VARS-219ENST00000461328 CLLU1OSQ5K130 101 aa17.09■□□□□ 0.33
VARS-219ENST00000461328 KRT79Q5XKE5 535 aa17.09■□□□□ 0.33
VARS-219ENST00000461328 MAEAQ7L5Y9 396 aa17.09■□□□□ 0.33
VARS-219ENST00000461328 ZNF598Q86UK7 904 aaKnown RBP17.09■□□□□ 0.33
VARS-219ENST00000461328 HELQQ8TDG4 1101 aa17.09■□□□□ 0.33
VARS-219ENST00000461328 INTS4Q96HW7 963 aaKnown RBP17.09■□□□□ 0.33
VARS-219ENST00000461328 TRAIPQ9BWF2 469 aa17.09■□□□□ 0.33
VARS-219ENST00000461328 POLR3FQ9H1D9 316 aaPredicted RBP17.09■□□□□ 0.33
VARS-219ENST00000461328 CWH43Q9H720 699 aa17.09■□□□□ 0.33
VARS-219ENST00000461328 AGPAT5Q9NUQ2 364 aa17.09■□□□□ 0.33
VARS-219ENST00000461328 DBR1Q9UK59 544 aaKnown RBP17.09■□□□□ 0.33
VARS-219ENST00000461328 H3BQ06 376 aaPredicted RBP17.08■□□□□ 0.32
VARS-219ENST00000461328 ERLIN2O94905 339 aa17.08■□□□□ 0.32
VARS-219ENST00000461328 HSP90AA1P07900 732 aaKnown RBP17.08■□□□□ 0.32
VARS-219ENST00000461328 ATF7P17544 494 aaPredicted RBP17.08■□□□□ 0.32
VARS-219ENST00000461328 MUTP22033 750 aa17.08■□□□□ 0.32
VARS-219ENST00000461328 IRS1P35568 1242 aa17.08■□□□□ 0.32
VARS-219ENST00000461328 ATP2C1P98194 919 aaPredicted RBP17.08■□□□□ 0.32
VARS-219ENST00000461328 UBE3AQ05086 875 aa17.08■□□□□ 0.32
VARS-219ENST00000461328 COL19A1Q14993 1142 aa17.08■□□□□ 0.32
VARS-219ENST00000461328 ZRSR1Q15695 479 aaKnown RBP17.08■□□□□ 0.32
VARS-219ENST00000461328 LRRC55Q6ZSA7 311 aa17.08■□□□□ 0.32
VARS-219ENST00000461328 IGSF22Q8N9C0 903 aa17.08■□□□□ 0.32
VARS-219ENST00000461328 MCPH1Q8NEM0 835 aa17.08■□□□□ 0.32
VARS-219ENST00000461328 ASAP3Q8TDY4 903 aa17.08■□□□□ 0.32
VARS-219ENST00000461328 MICAL1Q8TDZ2 1067 aa17.08■□□□□ 0.32
VARS-219ENST00000461328 MRPL9Q9BYD2 267 aaKnown RBP17.08■□□□□ 0.32
VARS-219ENST00000461328 IGFLR1Q9H665 355 aa17.08■□□□□ 0.32
VARS-219ENST00000461328 FAM105AQ9NUU6 356 aa17.08■□□□□ 0.32
VARS-219ENST00000461328 DDX19AQ9NUU7 478 aaKnown RBP17.08■□□□□ 0.32
VARS-219ENST00000461328 VWA3AA6NCI4 1184 aa17.07■□□□□ 0.32
VARS-219ENST00000461328 PP2D1A8MPX8 630 aa17.07■□□□□ 0.32
VARS-219ENST00000461328 RAB27AP51159 221 aa17.07■□□□□ 0.32
VARS-219ENST00000461328 PDIA5Q14554 519 aa17.07■□□□□ 0.32
VARS-219ENST00000461328 LONRF3Q496Y0 759 aa17.07■□□□□ 0.32
VARS-219ENST00000461328 PTCRAQ6ISU1 281 aaPredicted RBP17.07■□□□□ 0.32
VARS-219ENST00000461328 PADI6Q6TGC4 694 aa17.07■□□□□ 0.32
VARS-219ENST00000461328 KCNT2Q6UVM3 1135 aa17.07■□□□□ 0.32
VARS-219ENST00000461328 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.07■□□□□ 0.32
VARS-219ENST00000461328 LPPQ93052 612 aa17.07■□□□□ 0.32
VARS-219ENST00000461328 ZNF558Q96NG5 402 aa17.07■□□□□ 0.32
VARS-219ENST00000461328 MINDY3Q9H8M7 445 aa17.07■□□□□ 0.32
VARS-219ENST00000461328 TLR9Q9NR96 1032 aa17.07■□□□□ 0.32
VARS-219ENST00000461328 KIAA1024Q9UPX6 916 aa17.07■□□□□ 0.32
VARS-219ENST00000461328 ATG2AQ2TAZ0 1938 aa17.07■□□□□ 0.32
VARS-219ENST00000461328 LRRIQ4A6NIV6 560 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 INO80B-WBP1J3KQ70 363 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 BMP15O95972 392 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 GTF2F1P35269 517 aaKnown RBP eCLIP17.06■□□□□ 0.32
VARS-219ENST00000461328 PPM1AP35813 382 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 CAPSQ13938 189 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 PUS10Q3MIT2 529 aaKnown RBP17.06■□□□□ 0.32
VARS-219ENST00000461328 GLB1LQ6UWU2 654 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 ADGRD2Q7Z7M1 963 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 RSPH1Q8WYR4 309 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 SNX21Q969T3 373 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 PGBD4Q96DM1 585 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 CDK5RAP3Q96JB5 506 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 BHMT2Q9H2M3 363 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 GPRC5CQ9NQ84 441 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 PCDHGC5Q9Y5F6 944 aa17.06■□□□□ 0.32
VARS-219ENST00000461328 BRWD1Q9NSI6 2320 aa17.05■□□□□ 0.32
VARS-219ENST00000461328 PLXNA4Q9HCM2 1894 aa17.05■□□□□ 0.32
VARS-219ENST00000461328 SYT1P21579 422 aa17.05■□□□□ 0.32
VARS-219ENST00000461328 GLRA2P23416 452 aa17.05■□□□□ 0.32
VARS-219ENST00000461328 CDC25AP30304 524 aa17.05■□□□□ 0.32
VARS-219ENST00000461328 ARL2P36404 184 aa17.05■□□□□ 0.32
VARS-219ENST00000461328 PBX3P40426 434 aa17.05■□□□□ 0.32
VARS-219ENST00000461328 PTENP60484 403 aa17.05■□□□□ 0.32
VARS-219ENST00000461328 NCBP1Q09161 790 aaKnown RBP17.05■□□□□ 0.32
VARS-219ENST00000461328 IL17AQ16552 155 aa17.05■□□□□ 0.32
VARS-219ENST00000461328 ECM1Q16610 540 aa17.05■□□□□ 0.32
VARS-219ENST00000461328 CTC1Q2NKJ3 1217 aa17.05■□□□□ 0.32
VARS-219ENST00000461328 RBM23Q86U06 439 aaKnown RBP17.05■□□□□ 0.32
VARS-219ENST00000461328 MRPS27Q92552 414 aaKnown RBP17.05■□□□□ 0.32
VARS-219ENST00000461328 SPG21Q9NZD8 308 aa17.05■□□□□ 0.32
VARS-219ENST00000461328 PUF60Q9UHX1 559 aaKnown RBP17.05■□□□□ 0.32
VARS-219ENST00000461328 DNM3Q9UQ16 869 aa17.05■□□□□ 0.32
VARS-219ENST00000461328 FAM50BQ9Y247 325 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms