RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	SKIDA1	Q1XH10	827 aa		9.55	□□□□□ -0.88
SYNE1-215	ENST00000460912	LDHD	Q86WU2	507 aa		9.55	□□□□□ -0.88
SYNE1-215	ENST00000460912	PACSIN2	Q9UNF0	486 aa	Predicted RBP	9.55	□□□□□ -0.88
SYNE1-215	ENST00000460912	SLC45A1	Q9Y2W3	748 aa		9.55	□□□□□ -0.88
SYNE1-215	ENST00000460912	NR2E1	Q9Y466	385 aa		9.55	□□□□□ -0.88
SYNE1-215	ENST00000460912	EVI5	O60447	810 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	PAEP	P09466	180 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	ERCC3	P19447	782 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	PTGIR	P43119	386 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	KLHL30	Q0D2K2	578 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	CYP1B1	Q16678	543 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	KIAA0753	Q2KHM9	967 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	LRIG3	Q6UXM1	1119 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	ZSWIM2	Q8NEG5	633 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	NEK9	Q8TD19	979 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	AGO4	Q9HCK5	861 aa	Known RBP	9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	MAP3K20	Q9NYL2	800 aa	Known RBP	9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	PDCD11	Q14690	1871 aa	Known RBP	9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	HTT	P42858	3142 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	GOLGA8K	D6RF30	607 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	MPHOSPH10	O00566	681 aa	Known RBP	9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	LRRN2	O75325	713 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	ASNS	P08243	561 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	RFX1	P22670	979 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	ADSS	P30520	456 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	DLG4	P78352	724 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	CCDC142	Q17RM4	750 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	CCDC40	Q4G0X9	1142 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	PCNX4	Q63HM2	1172 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	ERMN	Q8TAM6	284 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	TMEM51	Q9NW97	253 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	TAS2R14	Q9NYV8	317 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	MYH9	P35579	1960 aa	Known RBP	9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	IQCA1L	A6NCM1	817 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	EIF3H	O15372	352 aa	Known RBP eCLIP	9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	P4HA2	O15460	535 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	XRCC5	P13010	732 aa	Known RBP	9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	CTNNA2	P26232	953 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	FKBP1B	P68106	108 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	DGKZ	Q13574	1117 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	RBM26	Q5T8P6	1007 aa	Known RBP	9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	SLC39A4	Q6P5W5	647 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	EP400NL	Q6ZTU2	488 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	LPAR1	Q92633	364 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	ARHGEF26	Q96DR7	871 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	NTPCR	Q9BSD7	190 aa	Known RBP	9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	GCNT4	Q9P109	453 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	PPP1R9A	Q9ULJ8	1098 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	FZD1	Q9UP38	647 aa		9.54	□□□□□ -0.88
SYNE1-215	ENST00000460912	PPFIA4	O75335	1185 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	FLT3	P36888	993 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	BACE1	P56817	501 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	SNRPF	P62306	86 aa	Known RBP	9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	USH1G	Q495M9	461 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	C11orf63	Q6NUN7	778 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	ALKBH5	Q6P6C2	394 aa	Known RBP	9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	ZDHHC24	Q6UX98	284 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	GBP6	Q6ZN66	633 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	MIGA2	Q7L4E1	593 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	AFAP1L1	Q8TED9	768 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	APEX2	Q9UBZ4	518 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	FEM1B	Q9UK73	627 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	PPFIA2	O75334	1257 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	PSMC2	P35998	433 aa	Known RBP	9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	RBM5	P52756	815 aa	Known RBP eCLIP	9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	CORO7	P57737	925 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	PPP3CA	Q08209	521 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	DUPD1	Q68J44	220 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	SAMD1	Q6SPF0	538 aa	Predicted RBP	9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	C6orf89	Q6UWU4	347 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	KSR1	Q8IVT5	923 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	PIGO	Q8TEQ8	1089 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	WHAMM	Q8TF30	809 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	WNK4	Q96J92	1243 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	UIMC1	Q96RL1	719 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	PARVG	Q9HBI0	331 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	SLC38A10	Q9HBR0	1119 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	TMBIM4	Q9HC24	238 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	RALGAPA2	Q2PPJ7	1873 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	GOLGA6B	A6NDN3	693 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	WDR46	O15213	610 aa	Known RBP	9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	FER	P16591	822 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	IBSP	P21815	317 aa	Predicted RBP	9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	GALC	P54803	685 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	BFSP1	Q12934	665 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	PPIL2	Q13356	520 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	BYSL	Q13895	437 aa	Known RBP	9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	UGCG	Q16739	394 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	CATSPERG	Q6ZRH7	1159 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	FAM160B2	Q86V87	743 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	FAM71A	Q8IYT1	594 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	ZKSCAN4	Q969J2	545 aa	Predicted RBP	9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	HOOK2	Q96ED9	719 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	GOLPH3	Q9H4A6	298 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	BMP2K	Q9NSY1	1161 aa	Predicted RBP	9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	NEU2	Q9Y3R4	380 aa		9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	COL4A4	P53420	1690 aa	Predicted RBP	9.53	□□□□□ -0.88
SYNE1-215	ENST00000460912	ITGA4	P13612	1032 aa		9.52	□□□□□ -0.88
SYNE1-215	ENST00000460912	RARRES1	P49788	294 aa		9.52	□□□□□ -0.88

Retrieved 100 of 20,778 RNA–protein pairs in 47 ms