RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 NUDT12Q9BQG2 462 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 CDC42EP4Q9H3Q1 356 aaKnown RBP8□□□□□ -1.13
CPSF6-202ENST00000435070 ZWILCHQ9H900 591 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 GRHL1Q9NZI5 618 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 ATXN10Q9UBB4 475 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 WASF2Q9Y6W5 498 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 OPHN1O60890 802 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 MARCKSL1P49006 195 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 TAF1BQ53T94 588 aaPredicted RBP8□□□□□ -1.13
CPSF6-202ENST00000435070 STMN2Q93045 179 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 ARHGAP23Q9P227 1491 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 FLT1P17948 1338 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8□□□□□ -1.13
CPSF6-202ENST00000435070 TBX10O75333 385 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 WFS1O76024 890 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 ADAMTS2O95450 1211 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 ANKRD27Q96NW4 1050 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 YIPF2Q9BWQ6 316 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 UBA5Q9GZZ9 404 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 LRMDAQ9H2I8 198 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 PCDHA6Q9UN73 950 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 PCDHA8Q9Y5H6 950 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 MAPK13O15264 365 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 FUT4P22083 530 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 CTTNQ14247 550 aaKnown RBP8□□□□□ -1.13
CPSF6-202ENST00000435070 PPP2R5BQ15173 497 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 HP1BP3Q5SSJ5 553 aaPredicted RBP8□□□□□ -1.13
CPSF6-202ENST00000435070 UNC13DQ70J99 1090 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 KCNK18Q7Z418 384 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 IRF2BP2Q7Z5L9 587 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 VPS52Q8N1B4 723 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 SLC35G2Q8TBE7 412 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 DDX27Q96GQ7 796 aaKnown RBP8□□□□□ -1.13
CPSF6-202ENST00000435070 RBM17Q96I25 401 aaKnown RBP8□□□□□ -1.13
CPSF6-202ENST00000435070 EDEM3Q9BZQ6 932 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 SUCLA2Q9P2R7 463 aaPredicted RBP8□□□□□ -1.13
CPSF6-202ENST00000435070 PRKAG3Q9UGI9 489 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 BZW2Q9Y6E2 419 aaKnown RBP8□□□□□ -1.13
CPSF6-202ENST00000435070 PIK3C2AO00443 1686 aa8□□□□□ -1.13
CPSF6-202ENST00000435070 GSTTP1A0A1W2PQM5 241 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 CFAP69A5D8W1 941 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 MAGEA13PA6NCF6 341 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 CHMP2AO43633 222 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 CYP1A1P04798 512 aaPredicted RBP7.99□□□□□ -1.13
CPSF6-202ENST00000435070 TAC1P20366 129 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 MARK3P27448 753 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 MAGEA8P43361 318 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 CALCOCO2Q13137 446 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 TMED1Q13445 227 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 DDB1Q16531 1140 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.99□□□□□ -1.13
CPSF6-202ENST00000435070 LRRC74BQ6ZQY2 392 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 LARP4BQ92615 738 aaKnown RBP7.99□□□□□ -1.13
CPSF6-202ENST00000435070 MCUR1Q96AQ8 359 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 TRAPPC9Q96Q05 1148 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 DNAI2Q9GZS0 605 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 TCRBV7S2A1N4TA0A589 114 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 ABLIM1O14639 778 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 HNRNPCP07910 306 aaKnown RBP eCLIP7.99□□□□□ -1.13
CPSF6-202ENST00000435070 T-ENOLP0DO92 83 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 CYP2D6P10635 497 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 CPA2P48052 419 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 POLGP54098 1239 aaPredicted RBP7.99□□□□□ -1.13
CPSF6-202ENST00000435070 RTP1P59025 263 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 CDR2Q01850 454 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 LRRC63Q05C16 580 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 CCDC137Q6PK04 289 aaKnown RBP7.99□□□□□ -1.13
CPSF6-202ENST00000435070 VPS36Q86VN1 386 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 TUBGCP5Q96RT8 1024 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 TTC1Q99614 292 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 MMTAG2Q9BU76 263 aaKnown RBP7.99□□□□□ -1.13
CPSF6-202ENST00000435070 ASIC3Q9UHC3 531 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 ADAMTS13Q76LX8 1427 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 TMEM2Q9UHN6 1383 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 MAGEB6P1A0A0J9YX57 407 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 TOM1O60784 492 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 UCHL3P15374 230 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 TMED2Q15363 201 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 ACSBG2Q5FVE4 666 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 ARL10Q8N8L6 244 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 KRT35Q92764 455 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 IFT43Q96FT9 208 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 RMI1Q9H9A7 625 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 CLIC5Q9NZA1 410 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 IGSF9BQ9UPX0 1349 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 DDX3XO00571 662 aaKnown RBP eCLIP7.99□□□□□ -1.134e-13■□□□□ 9.3
CPSF6-202ENST00000435070 MAP3K7O43318 606 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 CALM1P0DP23 149 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 CALM2P0DP24 149 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 CALM3P0DP25 149 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 PPP1R2P41236 205 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 OVGP1Q12889 678 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 MTFR1Q15390 333 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 PARP6Q2NL67 630 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 HERC4Q5GLZ8 1057 aaPredicted RBP7.99□□□□□ -1.13
CPSF6-202ENST00000435070 CYP4F22Q6NT55 531 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 TTC27Q6P3X3 843 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 RBM12BQ8IXT5 1001 aaKnown RBP7.99□□□□□ -1.13
CPSF6-202ENST00000435070 KBTBD2Q8IY47 623 aa7.99□□□□□ -1.13
CPSF6-202ENST00000435070 RASGEF1CQ8N431 466 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms