RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 FIZ1Q96SL8 496 aa12.42□□□□□ -0.42
LINC00539-203ENST00000434601 TSG101Q99816 390 aa12.42□□□□□ -0.42
LINC00539-203ENST00000434601 PPP1R12CQ9BZL4 782 aa12.42□□□□□ -0.42
LINC00539-203ENST00000434601 TRIM5Q9C035 493 aa12.42□□□□□ -0.42
LINC00539-203ENST00000434601 HIPK3Q9H422 1215 aa12.42□□□□□ -0.42
LINC00539-203ENST00000434601 POLD4Q9HCU8 107 aa12.42□□□□□ -0.42
LINC00539-203ENST00000434601 GPRC5CQ9NQ84 441 aa12.42□□□□□ -0.42
LINC00539-203ENST00000434601 XPNPEP1Q9NQW7 623 aa12.42□□□□□ -0.42
LINC00539-203ENST00000434601 ERAP1Q9NZ08 941 aa12.42□□□□□ -0.42
LINC00539-203ENST00000434601 MSRAQ9UJ68 235 aa12.42□□□□□ -0.42
LINC00539-203ENST00000434601 K7ENM7 598 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 DYNC1LI2O43237 492 aaPredicted RBP12.41□□□□□ -0.42
LINC00539-203ENST00000434601 FGBP02675 491 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 ZNF286BP0CG31 522 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 NMT1P30419 496 aaKnown RBP12.41□□□□□ -0.42
LINC00539-203ENST00000434601 ZNF75DP51815 510 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 IRX5P78411 483 aaPredicted RBP12.41□□□□□ -0.42
LINC00539-203ENST00000434601 FANCCQ00597 558 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 ALCAMQ13740 583 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 TARBP2Q15633 366 aaKnown RBP12.41□□□□□ -0.42
LINC00539-203ENST00000434601 CXCL17Q6UXB2 119 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 ZNF365Q70YC5 407 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 NELFCDQ8IXH7 590 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 RPUSD2Q8IZ73 545 aaKnown RBP12.41□□□□□ -0.42
LINC00539-203ENST00000434601 SLC7A3Q8WY07 619 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 HERVK_113Q902F9 699 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 PDLIM2Q96JY6 352 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 PPP1R9BQ96SB3 815 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 CEP89Q96ST8 783 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 DUSP9Q99956 384 aaKnown RBP12.41□□□□□ -0.42
LINC00539-203ENST00000434601 PBX4Q9BYU1 374 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 THAP9Q9H5L6 903 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 DHX33Q9H6R0 707 aaKnown RBP12.41□□□□□ -0.42
LINC00539-203ENST00000434601 SAMSN1Q9NSI8 373 aaKnown RBP12.41□□□□□ -0.42
LINC00539-203ENST00000434601 ZNF215Q9UL58 517 aaPredicted RBP12.41□□□□□ -0.42
LINC00539-203ENST00000434601 TRPC6Q9Y210 931 aa12.41□□□□□ -0.42
LINC00539-203ENST00000434601 SIP14410 1827 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 HBP1O60381 514 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 PPFIA4O75335 1185 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 PPP1R37O75864 691 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 PRPF6O94906 941 aaKnown RBP12.4□□□□□ -0.42
LINC00539-203ENST00000434601 CDK11BP21127 795 aaKnown RBP12.4□□□□□ -0.42
LINC00539-203ENST00000434601 CYP2C18P33260 490 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 SPAG1Q07617 926 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 DMP1Q13316 513 aaPredicted RBP12.4□□□□□ -0.42
LINC00539-203ENST00000434601 DGKDQ16760 1214 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 KNOP1Q1ED39 458 aaKnown RBP12.4□□□□□ -0.42
LINC00539-203ENST00000434601 ZCWPW2Q504Y3 356 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 HSP90AA4PQ58FG1 418 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 TJAP1Q5JTD0 557 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 ANKRD40Q6AI12 368 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 PPP4R3CPQ6ZMV5 832 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 ZNF720Q7Z2F6 126 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 CSGALNACT2Q8N6G5 542 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 ZNF507Q8TCN5 953 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 C16orf70Q9BSU1 422 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 POLR3FQ9H1D9 316 aaPredicted RBP12.4□□□□□ -0.42
LINC00539-203ENST00000434601 KCTD10Q9H3F6 313 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 C17orf75Q9HAS0 396 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 IFNKQ9P0W0 207 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 COL1A2P08123 1366 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 ZMYM2Q9UBW7 1377 aa12.4□□□□□ -0.42
LINC00539-203ENST00000434601 CHD7Q9P2D1 2997 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 TRANK1O15050 2925 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 CBFA2T2O43439 604 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 GAS2O43903 313 aaKnown RBP12.39□□□□□ -0.43
LINC00539-203ENST00000434601 MAFO75444 373 aaPredicted RBP12.39□□□□□ -0.43
LINC00539-203ENST00000434601 FGFR1OPO95684 399 aaKnown RBP12.39□□□□□ -0.43
LINC00539-203ENST00000434601 SERPINC1P01008 464 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 ACRP10323 421 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 CDC25BP30305 580 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 CPT1AP50416 773 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 NCKAP1LP55160 1127 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 PEX3P56589 373 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 TBC1D8BQ0IIM8 1120 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 BRDTQ58F21 947 aaPredicted RBP12.39□□□□□ -0.43
LINC00539-203ENST00000434601 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.39□□□□□ -0.43
LINC00539-203ENST00000434601 FAM114A1Q8IWE2 563 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 EXOC8Q8IYI6 725 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 ANKRD20A12PQ8NF67 263 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 SPIRE2Q8WWL2 714 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 MRFAP1L1Q96HT8 127 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 JPH2Q9BR39 696 aaPredicted RBP12.39□□□□□ -0.43
LINC00539-203ENST00000434601 SRRTQ9BXP5 876 aaKnown RBP12.39□□□□□ -0.43
LINC00539-203ENST00000434601 ST6GALNAC4Q9H4F1 302 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 SLC28A3Q9HAS3 691 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 PCDHB13Q9Y5F0 798 aa12.39□□□□□ -0.43
LINC00539-203ENST00000434601 SPTBN5Q9NRC6 3674 aaKnown RBP12.38□□□□□ -0.43
LINC00539-203ENST00000434601 A6NJR5 290 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 GRXCR1A8MXD5 290 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 ZBTB42B2RXF5 422 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 KCNJ18B7U540 433 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 CALUO43852 315 aaPredicted RBP12.38□□□□□ -0.43
LINC00539-203ENST00000434601 PFKMP08237 780 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 EEF1GP26641 437 aaKnown RBP12.38□□□□□ -0.43
LINC00539-203ENST00000434601 HOXD13P35453 343 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 ARL2P36404 184 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 NPTX2P47972 431 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 SMTNP53814 917 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 KCNJ12Q14500 433 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms