RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 CDAN1Q8IWY9 1227 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 SEC14L1Q92503 715 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 AGPAT1Q99943 283 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 SH2D3AQ9BRG2 576 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.78□□□□□ -0.365e-38■■■■■ 698.7
CD44-209ENST00000433892 TMOD4Q9NZQ9 345 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 TMOD2Q9NZR1 351 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 KRT13P13646 458 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 SETQ01105 290 aaPredicted RBP12.78□□□□□ -0.36
CD44-209ENST00000433892 PPP3CAQ08209 521 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 KIF22Q14807 665 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 STYK1Q6J9G0 422 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 AADACL2Q6P093 401 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 B4GALNT4Q76KP1 1039 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 MIGA2Q7L4E1 593 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 TRMT1LQ7Z2T5 733 aaKnown RBP12.78□□□□□ -0.36
CD44-209ENST00000433892 ARHGEF19Q8IW93 802 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 ALG3Q92685 438 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 GLG1Q92896 1179 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 MXRA8Q9BRK3 442 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 GLIS2Q9BZE0 524 aaPredicted RBP12.78□□□□□ -0.36
CD44-209ENST00000433892 CARD9Q9H257 536 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 ERVK-5Q9HDB9 667 aa12.78□□□□□ -0.36
CD44-209ENST00000433892 PPANQ9NQ55 473 aaKnown RBP12.78□□□□□ -0.36
CD44-209ENST00000433892 CHORDC1Q9UHD1 332 aaPredicted RBP12.78□□□□□ -0.36
CD44-209ENST00000433892 ZNF646O15015 1829 aaPredicted RBP12.78□□□□□ -0.36
CD44-209ENST00000433892 RBBP6Q7Z6E9 1792 aaKnown RBP12.77□□□□□ -0.36
CD44-209ENST00000433892 SPDYE2BA6NHP3 402 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 E7EVH7 732 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 PPIP5K2O43314 1243 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 ERLIN2O94905 339 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 FTLP02792 175 aaPredicted RBP12.77□□□□□ -0.36
CD44-209ENST00000433892 SPDYE6P0CI01 402 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 BCRP11274 1271 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 GCLMP48507 274 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 PTENP60484 403 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 DR1Q01658 176 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 MTMR3Q13615 1198 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 GRIPAP1Q4V328 841 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 ODF2Q5BJF6 829 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 MIER3Q7Z3K6 550 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 NLRP14Q86W24 1093 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 ZSWIM2Q8NEG5 633 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 ATP8B4Q8TF62 1192 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 ZNF473Q8WTR7 871 aaKnown RBP12.77□□□□□ -0.36
CD44-209ENST00000433892 AGBL1Q96MI9 1066 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 CCT8L2Q96SF2 557 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 CBWD1Q9BRT8 395 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 VCPKMTQ9H867 229 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 FAM114A2Q9NRY5 505 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 KCNH7Q9NS40 1196 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 ALG6Q9Y672 507 aa12.77□□□□□ -0.36
CD44-209ENST00000433892 MYH11P35749 1972 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 DCDC2CA8MYV0 355 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 INPP5BP32019 993 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 HSPA1LP34931 641 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 USP8P40818 1118 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 VAMP7P51809 220 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 TBC1D10BQ4KMP7 808 aaPredicted RBP12.77□□□□□ -0.37
CD44-209ENST00000433892 ZNF746Q6NUN9 644 aaPredicted RBP12.77□□□□□ -0.37
CD44-209ENST00000433892 RUFY4Q6ZNE9 571 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 FMNL3Q8IVF7 1028 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 TEX2Q8IWB9 1127 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 MYCBPAPQ8TBZ2 947 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 RIT2Q99578 217 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 LRRC4CQ9HCJ2 640 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 CTTNBP2NLQ9P2B4 639 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 LARSQ9P2J5 1176 aaKnown RBP12.77□□□□□ -0.37
CD44-209ENST00000433892 ATP8A1Q9Y2Q0 1164 aa12.77□□□□□ -0.37
CD44-209ENST00000433892 UTRNP46939 3433 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 TMEM110-MUSTN1A8MSY1 372 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 APBA3O96018 575 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 TMOD1P28289 359 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 BIRC3Q13489 604 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 INTS8Q75QN2 995 aaKnown RBP12.76□□□□□ -0.37
CD44-209ENST00000433892 RPUSD2Q8IZ73 545 aaKnown RBP12.76□□□□□ -0.37
CD44-209ENST00000433892 ARFGAP2Q8N6H7 521 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 IL31RAQ8NI17 732 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 C7orf43Q8WVR3 580 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 FAM151AQ8WW52 585 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 KAT5Q92993 513 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 FMO2Q99518 471 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 VEZTQ9HBM0 779 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 COL20A1Q9P218 1284 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 ZNF70Q9UC06 446 aaPredicted RBP12.76□□□□□ -0.37
CD44-209ENST00000433892 NOVA2Q9UNW9 492 aaKnown RBP12.76□□□□□ -0.37
CD44-209ENST00000433892 DIS3Q9Y2L1 958 aaKnown RBP12.76□□□□□ -0.37
CD44-209ENST00000433892 ZHX2Q9Y6X8 837 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 COL2A1P02458 1487 aaPredicted RBP12.76□□□□□ -0.37
CD44-209ENST00000433892 BRWD3Q6RI45 1802 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 GOLGA6L10A0A0M3HER8 536 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 TMEM150BA6NC51 233 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 RAD17O75943 681 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 CPP00450 1065 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 MARCKSL1P49006 195 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 CETN1Q12798 172 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 KRT35Q92764 455 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 NAP1L3Q99457 506 aaPredicted RBP12.76□□□□□ -0.37
CD44-209ENST00000433892 ERP44Q9BS26 406 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 TMEM39BQ9GZU3 492 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms