RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 FRMPD4Q14CM0 1322 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 SPDYE3A6NKU9 549 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 PDXKO00764 312 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 TP73O15350 636 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 CFBP00751 764 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 H2AFZP0C0S5 128 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 GCFC2P16383 781 aaKnown RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 FMO5P49326 533 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 GTF2A1P52655 376 aaPredicted RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 TNNC1P63316 161 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 MAPK7Q13164 816 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 GPATCH4Q5T3I0 446 aaKnown RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 GBP6Q6ZN66 633 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 MMS22LQ6ZRQ5 1243 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 H2AFVQ71UI9 128 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 FAM186BQ8IYM0 893 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 MYCT1Q8N699 235 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 EPS8L3Q8TE67 593 aaKnown RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 WHAMMQ8TF30 809 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 HSD17B14Q9BPX1 270 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 TYW1Q9NV66 732 aaKnown RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 DNAJC17Q9NVM6 304 aaKnown RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 GRHL1Q9NZI5 618 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 DNM3Q9UQ16 869 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 TRPC6Q9Y210 931 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 RABGAP1Q9Y3P9 1069 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 RPTORQ8N122 1335 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 PITPNM2Q9BZ72 1349 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 BTNL10A8MVZ5 291 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 O00370 1275 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 HSPA1AP0DMV8 641 aaKnown RBP7.78□□□□□ -1.16
COL28A1-202ENST00000430711 HSPA1BP0DMV9 641 aaKnown RBP7.78□□□□□ -1.16
COL28A1-202ENST00000430711 FGFR4P22455 802 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 SOX5P35711 763 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 RBM5P52756 815 aaKnown RBP eCLIP7.78□□□□□ -1.16
COL28A1-202ENST00000430711 SOX10P56693 466 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 BMT2Q1RMZ1 405 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 Q4G0T1 1027 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 EMC10Q5UCC4 262 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 FOXR2Q6PJQ5 311 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 NSMFQ6X4W1 530 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 OTOP1Q7RTM1 612 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 PRUNE1Q86TP1 453 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 RUBCNQ92622 972 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 FAM118BQ9BPY3 351 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 CBWD1Q9BRT8 395 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 KIFC3Q9BVG8 833 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 INTS2Q9H0H0 1204 aaKnown RBP7.78□□□□□ -1.16
COL28A1-202ENST00000430711 SEMA4AQ9H3S1 761 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 UNC45AQ9H3U1 944 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 EFCC1Q9HA90 598 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 GPRC5CQ9NQ84 441 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 AGPAT3Q9NRZ7 376 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 HAUS2Q9NVX0 235 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 TSKSQ9UJT2 592 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 PRR12Q9ULL5 1215 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 GOLGA8IPA6NC78 632 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 GOLGA8JA6NMD2 632 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 TRAPPC3O43617 180 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 GNA14O95837 355 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 FAM107AO95990 144 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 CHRM1P11229 460 aaPredicted RBP7.78□□□□□ -1.16
COL28A1-202ENST00000430711 CHRNB2P17787 502 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 VCAM1P19320 739 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 SSTR3P32745 418 aaPredicted RBP7.78□□□□□ -1.16
COL28A1-202ENST00000430711 RPL21P46778 160 aaKnown RBP7.78□□□□□ -1.16
COL28A1-202ENST00000430711 PLTPP55058 493 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 KRT71Q3SY84 523 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 EPC2Q52LR7 807 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 SYDE2Q5VT97 1194 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 PAXIP1Q6ZW49 1069 aaPredicted RBP7.78□□□□□ -1.16
COL28A1-202ENST00000430711 FBXO11Q86XK2 927 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 PRELID2Q8N945 189 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 IPO4Q8TEX9 1081 aaKnown RBP7.78□□□□□ -1.16
COL28A1-202ENST00000430711 SLC16A10Q8TF71 515 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 TBC1D22AQ8WUA7 517 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 SEC14L1Q92503 715 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 DHX38Q92620 1227 aaKnown RBP7.78□□□□□ -1.16
COL28A1-202ENST00000430711 TEKT1Q969V4 418 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 ZC3H12CQ9C0D7 883 aaKnown RBP7.78□□□□□ -1.16
COL28A1-202ENST00000430711 MLXIPLQ9NP71 852 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 TOPORSQ9NS56 1045 aaPredicted RBP7.78□□□□□ -1.16
COL28A1-202ENST00000430711 COL20A1Q9P218 1284 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 CTNNAL1Q9UBT7 734 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 PCDHA3Q9Y5H8 950 aa7.78□□□□□ -1.16
COL28A1-202ENST00000430711 NCANO14594 1321 aa7.77□□□□□ -1.17
COL28A1-202ENST00000430711 GCOM1H8Y6P7 765 aaPredicted RBP7.77□□□□□ -1.17
COL28A1-202ENST00000430711 PSMD10O75832 226 aa7.77□□□□□ -1.17
COL28A1-202ENST00000430711 BBOX1O75936 387 aa7.77□□□□□ -1.17
COL28A1-202ENST00000430711 SGPL1O95470 568 aa7.77□□□□□ -1.17
COL28A1-202ENST00000430711 EYA4O95677 639 aa7.77□□□□□ -1.17
COL28A1-202ENST00000430711 MYZAPP0CAP1 466 aa7.77□□□□□ -1.17
COL28A1-202ENST00000430711 DRD4P21917 467 aa7.77□□□□□ -1.17
COL28A1-202ENST00000430711 PTGIRP43119 386 aa7.77□□□□□ -1.17
COL28A1-202ENST00000430711 GCLMP48507 274 aa7.77□□□□□ -1.17
COL28A1-202ENST00000430711 TNIP1Q15025 636 aa7.77□□□□□ -1.17
COL28A1-202ENST00000430711 GRIPAP1Q4V328 841 aa7.77□□□□□ -1.17
COL28A1-202ENST00000430711 SEPT14Q6ZU15 432 aa7.77□□□□□ -1.17
COL28A1-202ENST00000430711 OTUD6BQ8N6M0 293 aa7.77□□□□□ -1.17
COL28A1-202ENST00000430711 NLGN2Q8NFZ4 835 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms