RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.75□□□□□ -0.21
USP40-205ENST00000430158 FRMD3A2A2Y4 597 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 SFI1A8K8P3 1242 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 M0QZ92 97 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 MGEA5O60502 916 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 FGBP02675 491 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 SLFN14P0C7P3 912 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 MBTD1Q05BQ5 628 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 DHX8Q14562 1220 aaKnown RBP13.75□□□□□ -0.21
USP40-205ENST00000430158 PSRC1Q6PGN9 363 aaPredicted RBP13.75□□□□□ -0.21
USP40-205ENST00000430158 SV2BQ7L1I2 683 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 SRGAP1Q7Z6B7 1085 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 FMR1NBQ8N0W7 255 aaPredicted RBP13.75□□□□□ -0.21
USP40-205ENST00000430158 RASSF8Q8NHQ8 419 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 NLRP7Q8WX94 980 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 MRPS27Q92552 414 aaKnown RBP13.75□□□□□ -0.21
USP40-205ENST00000430158 SEPT8Q92599 483 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 DDX12PQ92771 950 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 NLRP4Q96MN2 994 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 IFIH1Q9BYX4 1025 aaKnown RBP13.75□□□□□ -0.21
USP40-205ENST00000430158 GCOM2Q9BZD3 368 aaPredicted RBP13.75□□□□□ -0.21
USP40-205ENST00000430158 CCDC113Q9H0I3 377 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 ARHGAP28Q9P2N2 729 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 SERTAD1Q9UHV2 236 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 ODF2LQ9ULJ1 636 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 GINS2Q9Y248 185 aa13.75□□□□□ -0.21
USP40-205ENST00000430158 ENPP3O14638 875 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 RPS6KA5O75582 802 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 PLS3P13797 630 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 FGFR4P22455 802 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 HOXA11P31270 313 aaPredicted RBP13.74□□□□□ -0.21
USP40-205ENST00000430158 NAMPTP43490 491 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 NPTX2P47972 431 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 RAD51AP2Q09MP3 1159 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 MMRN1Q13201 1228 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 FAM43BQ6ZT52 329 aaPredicted RBP13.74□□□□□ -0.21
USP40-205ENST00000430158 OTOP2Q7RTS6 562 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 TAS1R3Q7RTX0 852 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 SPIRE2Q8WWL2 714 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 STAMQ92783 540 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 APBB2Q92870 758 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 DRC1Q96MC2 740 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 C7orf25Q9BPX7 421 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 TNMDQ9H2S6 317 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 FZD8Q9H461 694 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 C17orf75Q9HAS0 396 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 USP25Q9UHP3 1055 aa13.74□□□□□ -0.21
USP40-205ENST00000430158 ABHD14A-ACY1A0A1B0GW23 586 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 GPR182O15218 404 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 BAIAP3O94812 1187 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 ZNF202O95125 648 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 EDN1P05305 212 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 PYGBP11216 843 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 SYKP43405 635 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 WDR5P61964 334 aaKnown RBP13.73□□□□□ -0.21
USP40-205ENST00000430158 FAM189BP81408 668 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 EHHADHQ08426 723 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 PAK2Q13177 524 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 TFDP1Q14186 410 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 FAM187BQ17R55 369 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 SPNS2Q8IVW8 549 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 PAGE5Q96GU1 130 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 PYM1Q9BRP8 204 aaKnown RBP13.73□□□□□ -0.21
USP40-205ENST00000430158 KIFC3Q9BVG8 833 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 STRA6Q9BX79 667 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 TRIM9Q9C026 710 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 MAGEF1Q9HAY2 307 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 CHD9Q3L8U1 2897 aa13.73□□□□□ -0.21
USP40-205ENST00000430158 COL4A6Q14031 1691 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 GBF1Q92538 1859 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 A0A1W2PPC1 479 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 LIG1P18858 919 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 PHKA2P46019 1235 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 NCKAP1LP55160 1127 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 PEX3P56589 373 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 DEFB103AP81534 67 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 IKBKEQ14164 716 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 PPP2R5AQ15172 486 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.72□□□□□ -0.21
USP40-205ENST00000430158 KRBA2Q6ZNG9 492 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 DYMQ7RTS9 669 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 GRAMD1CQ8IYS0 662 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 TDHQ8IZJ6 230 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 TMEM161BQ8NDZ6 487 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 TRAIPQ9BWF2 469 aa13.72□□□□□ -0.21
USP40-205ENST00000430158 INO80BQ9C086 356 aaPredicted RBP13.72□□□□□ -0.21
USP40-205ENST00000430158 LRRIQ4A6NIV6 560 aa13.71□□□□□ -0.21
USP40-205ENST00000430158 C9IYK1 514 aa13.71□□□□□ -0.21
USP40-205ENST00000430158 B4GALT5O43286 388 aa13.71□□□□□ -0.21
USP40-205ENST00000430158 KLRC4O43908 158 aa13.71□□□□□ -0.21
USP40-205ENST00000430158 TSPAN1O60635 241 aa13.71□□□□□ -0.21
USP40-205ENST00000430158 PPP1R37O75864 691 aa13.71□□□□□ -0.21
USP40-205ENST00000430158 MAPTP10636 758 aaKnown RBP13.71□□□□□ -0.21
USP40-205ENST00000430158 CASP1P29466 404 aa13.71□□□□□ -0.21
USP40-205ENST00000430158 FAM160A1Q05DH4 1040 aa13.71□□□□□ -0.21
USP40-205ENST00000430158 NFX1Q12986 1120 aaKnown RBP13.71□□□□□ -0.21
USP40-205ENST00000430158 CUL4BQ13620 913 aa13.71□□□□□ -0.21
USP40-205ENST00000430158 PCBP1Q15365 356 aaKnown RBP eCLIP13.71□□□□□ -0.21
USP40-205ENST00000430158 CSPP1Q1MSJ5 1256 aa13.71□□□□□ -0.21
USP40-205ENST00000430158 UBXN11Q5T124 520 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms