RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 SLC13A1Q9BZW2 595 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 AASDHPPTQ9NRN7 309 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 INVSQ9Y283 1065 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 PCDHGA9Q9Y5G4 932 aaKnown RBP5.54□□□□□ -1.52
USP40-204ENST00000427947 PCDHGA8Q9Y5G5 932 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 PCDHGA7Q9Y5G6 932 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 PCDHGA6Q9Y5G7 932 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 PCDHGA3Q9Y5H0 932 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 PCDHGA2Q9Y5H1 932 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 RBM8AQ9Y5S9 174 aaKnown RBP5.54□□□□□ -1.52
USP40-204ENST00000427947 KLHL33A6NCF5 533 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 OTOL1A6NHN0 477 aaPredicted RBP5.53□□□□□ -1.52
USP40-204ENST00000427947 ARHGAP6O43182 974 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 SNUPNO95149 360 aaKnown RBP5.53□□□□□ -1.52
USP40-204ENST00000427947 LY86O95711 162 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 GAAP10253 952 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 CNR2P34972 360 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 RNF151Q2KHN1 245 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 PLEKHH3Q7Z736 793 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 CLEC14AQ86T13 490 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 JDP2Q8WYK2 163 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 SSH1Q8WYL5 1049 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 JADE3Q92613 823 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 HOOK2Q96ED9 719 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 ZNF277Q9NRM2 450 aaPredicted RBP5.53□□□□□ -1.52
USP40-204ENST00000427947 KLHL42Q9P2K6 505 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 ZBTB21Q9ULJ3 1066 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 G3BP2Q9UN86 482 aaKnown RBP5.53□□□□□ -1.52
USP40-204ENST00000427947 THRAP3Q9Y2W1 955 aaKnown RBP5.53□□□□□ -1.52
USP40-204ENST00000427947 NR2E1Q9Y466 385 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 CTDP1Q9Y5B0 961 aaPredicted RBP5.53□□□□□ -1.52
USP40-204ENST00000427947 SLC4A7Q9Y6M7 1214 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 DUSP10Q9Y6W6 482 aa5.53□□□□□ -1.52
USP40-204ENST00000427947 C2orf78A6NCI8 922 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 HSP90B1P14625 803 aaKnown RBP5.52□□□□□ -1.53
USP40-204ENST00000427947 EPHB1P54762 984 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 RAC3P60763 192 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 KRT85P78386 507 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 MCL1Q07820 350 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 TCIRG1Q13488 830 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 ODF1Q14990 250 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 ACAP1Q15027 740 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 ADRM1Q16186 407 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 EFCAB2Q5VUJ9 269 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 ARHGEF18Q6ZSZ5 1173 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 UNC5BQ8IZJ1 945 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 PPM1NQ8N819 430 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 PLA2G15Q8NCC3 412 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 GLB1L3Q8NCI6 653 aaPredicted RBP5.52□□□□□ -1.53
USP40-204ENST00000427947 PIK3C3Q8NEB9 887 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 LPPQ93052 612 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 SLC7A6OSQ96CW6 309 aaPredicted RBP5.52□□□□□ -1.53
USP40-204ENST00000427947 TEKT5Q96M29 485 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 XYLT2Q9H1B5 865 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 ADAM7Q9H2U9 754 aa5.52□□□□□ -1.53
USP40-204ENST00000427947 LUC7L2Q9Y383 392 aaKnown RBP5.52□□□□□ -1.53
USP40-204ENST00000427947 A0A1W2PR48 441 aa5.51□□□□□ -1.53
USP40-204ENST00000427947 PRAMEF4O60810 478 aa5.51□□□□□ -1.53
USP40-204ENST00000427947 TOX4O94842 621 aa5.51□□□□□ -1.53
USP40-204ENST00000427947 CNOT4O95628 575 aaKnown RBP5.51□□□□□ -1.53
USP40-204ENST00000427947 RECQLP46063 649 aaPredicted RBP5.51□□□□□ -1.53
USP40-204ENST00000427947 BPIFB4P59827 614 aa5.51□□□□□ -1.53
USP40-204ENST00000427947 ATP2C1P98194 919 aaPredicted RBP5.51□□□□□ -1.53
USP40-204ENST00000427947 HGFACQ04756 655 aa5.51□□□□□ -1.53
USP40-204ENST00000427947 PIN1Q13526 163 aaPredicted RBP5.51□□□□□ -1.53
USP40-204ENST00000427947 NFYCQ13952 458 aa5.51□□□□□ -1.53
USP40-204ENST00000427947 ANO4Q32M45 955 aa5.51□□□□□ -1.53
USP40-204ENST00000427947 KRT40Q6A162 431 aa5.51□□□□□ -1.53
USP40-204ENST00000427947 BTNL9Q6UXG8 535 aa5.51□□□□□ -1.53
USP40-204ENST00000427947 RAVER1Q8IY67 606 aaKnown RBP5.51□□□□□ -1.53
USP40-204ENST00000427947 FATE1Q969F0 183 aa5.51□□□□□ -1.53
USP40-204ENST00000427947 C14orf93Q9H972 538 aaKnown RBP5.51□□□□□ -1.53
USP40-204ENST00000427947 PARD6AQ9NPB6 346 aa5.51□□□□□ -1.53
USP40-204ENST00000427947 JADE2Q9NQC1 790 aa5.51□□□□□ -1.53
USP40-204ENST00000427947 DMRT3Q9NQL9 472 aa5.51□□□□□ -1.53
USP40-204ENST00000427947 LAMTOR5O43504 91 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 TMEM127O75204 238 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 NDUFS2O75306 463 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 ALDH1A2O94788 518 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 LTA4HP09960 611 aaKnown RBP5.5□□□□□ -1.53
USP40-204ENST00000427947 C5AR1P21730 350 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 KIR2DL3P43628 341 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 RAB27AP51159 221 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 PPP2CBP62714 309 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 PPP2CAP67775 309 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 MEF2AQ02078 507 aaPredicted RBP5.5□□□□□ -1.53
USP40-204ENST00000427947 MALLQ13021 153 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 SURF1Q15526 300 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 MUM1L1Q5H9M0 696 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 UBXN11Q5T124 520 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 FRMD5Q7Z6J6 570 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 ANKRD53Q8N9V6 530 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 NEIL1Q96FI4 390 aaPredicted RBP5.5□□□□□ -1.53
USP40-204ENST00000427947 PAWRQ96IZ0 340 aaKnown RBP5.5□□□□□ -1.53
USP40-204ENST00000427947 RPL10LQ96L21 214 aaKnown RBP5.5□□□□□ -1.53
USP40-204ENST00000427947 LRRC37BQ96QE4 947 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 C12orf65Q9H3J6 166 aaKnown RBP5.5□□□□□ -1.53
USP40-204ENST00000427947 IP6K2Q9UHH9 426 aa5.5□□□□□ -1.53
USP40-204ENST00000427947 PUF60Q9UHX1 559 aaKnown RBP5.5□□□□□ -1.53
USP40-204ENST00000427947 DNM3Q9UQ16 869 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms