RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 NSUN7Q8NE18 718 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TESK2Q96S53 571 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 NOL6Q9H6R4 1146 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ARHGAP31Q2M1Z3 1444 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 PALMO75781 387 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CALN1Q9BXU9 219 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 C8orf4Q9NR00 106 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 LRRIQ1Q96JM4 1722 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 A0A1W2PQ72 361 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 RTN1Q16799 776 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 DAB2IPQ5VWQ8 1189 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 RFWD3Q6PCD5 774 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TPK1Q9H3S4 243 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 IQGAP1P46940 1657 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 PTCH1Q13635 1447 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CBFA2T3O75081 653 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 GEMIN4P57678 1058 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 AP1B1Q10567 949 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF423Q2M1K9 1284 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 PPP2R2DQ66LE6 453 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 NME9Q86XW9 330 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 FAM20CQ8IXL6 584 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 NATD1Q8N6N6 113 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 NAPBQ9H115 298 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TUFT1Q9NNX1 390 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 STX8Q9UNK0 236 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 VAMP4O75379 141 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 SF3B3Q15393 1217 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CCDC77Q9BR77 488 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CYP39A1Q9NYL5 469 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 LRRC7Q96NW7 1537 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 GOLGA8QA0A0J9YX86 632 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 GOLGA8OA6NCC3 632 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 GOLGA8NF8WBI6 632 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 PDLIM1O00151 329 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 WDR93Q6P2C0 686 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 LRRC49Q8IUZ0 686 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ARHGAP26Q9UNA1 814 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 COMMD10Q9Y6G5 202 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 RCVRNP35243 200 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 KRT76Q01546 638 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 HAUS3Q68CZ6 603 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TMC4Q7Z404 712 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CCDC84Q86UT8 332 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CLVS1Q8IUQ0 354 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CCDC103Q8IW40 242 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 SLC7A3Q8WY07 619 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 HAUS8Q9BT25 410 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 PUS3Q9BZE2 481 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 STRN4Q9NRL3 753 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 FARSBQ9NSD9 589 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CLTCL1P53675 1640 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 KLF18A0A0U1RQI7 1052 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 PSMD14O00487 310 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 GRAMD2AQ8IUY3 354 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 POU5F2Q8N7G0 328 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 PDCD6IPQ8WUM4 868 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 A0A1W2PQ67 120 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 RILPL1Q5EBL4 403 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TBC1D10AQ9BXI6 508 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 PITPNM3Q9BZ71 974 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 PRDM11Q9NQV5 511 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 H3BUI4 141 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TRPC1P48995 793 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 HIRAP54198 1017 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 SSRP1Q08945 709 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 KRT80Q6KB66 452 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 RASGRP2Q7LDG7 609 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 KLHL42Q9P2K6 505 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 WASF2Q9Y6W5 498 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 B2RBV5 119 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 INO80B-WBP1J3KQ70 363 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 GIPC1O14908 333 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 SNX2O60749 519 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 FAM161BQ96MY7 647 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 RPAP3Q9H6T3 665 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CPSF3Q9UKF6 684 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ARHGEF10O15013 1369 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 EFCAB6Q5THR3 1501 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 C1orf232A0A0U1RR37 186 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TRIM64A6NGJ6 449 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TRIM64BA6NI03 449 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF174Q15697 407 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 C6orf89Q6UWU4 347 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 INTS13Q9NVM9 706 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 GMEB1Q9Y692 573 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 J3QRK9 145 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ASAP2O43150 1006 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CDR2Q01850 454 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 GEN1Q17RS7 908 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 PABPC1LQ4VXU2 614 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ADALQ6DHV7 355 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 OSTM1Q86WC4 334 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CDR2LQ86X02 465 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ABTB2Q8N961 1025 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ST13P5Q8NFI4 369 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 SNX29Q8TEQ0 813 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 FBXL8Q96CD0 374 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 INPP4AQ96PE3 977 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TGS1Q96RS0 853 aaKnown RBP3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms