RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 RNF26Q9BY78 433 aaPredicted RBP9.11□□□□□ -0.95
VIM-202ENST00000421459 AGXT2Q9BYV1 514 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 MINDY3Q9H8M7 445 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 FAM105AQ9NUU6 356 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 DBR1Q9UK59 544 aaKnown RBP9.11□□□□□ -0.95
VIM-202ENST00000421459 KCNJ14Q9UNX9 436 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 SORCS3Q9UPU3 1222 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 PIEZO1Q92508 2521 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 NID2Q14112 1375 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 EVPLQ92817 2033 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 CYP3A7-CYP3A51PA0A087WV96 503 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 FSD2A1L4K1 749 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 F8W810 466 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 M0R2N6 131 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 C2CD2LO14523 706 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 ZBTB39O15060 712 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 GALR2O43603 387 aaPredicted RBP9.1□□□□□ -0.95
VIM-202ENST00000421459 ST18O60284 1047 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 MAFO75444 373 aaPredicted RBP9.1□□□□□ -0.95
VIM-202ENST00000421459 POMCP01189 267 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 SRGAP2CP0DJJ0 459 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 CTSAP10619 480 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 CYP3A7P24462 503 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 MTHFRP42898 656 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 RNASELQ05823 741 aaKnown RBP9.1□□□□□ -0.95
VIM-202ENST00000421459 MTMR3Q13615 1198 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 PTPN14Q15678 1187 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 INF2Q27J81 1249 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 UBXN11Q5T124 520 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 FAM43BQ6ZT52 329 aaPredicted RBP9.1□□□□□ -0.95
VIM-202ENST00000421459 CATSPER4Q7RTX7 472 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 DDX53Q86TM3 631 aaKnown RBP9.1□□□□□ -0.95
VIM-202ENST00000421459 TMEM87AQ8NBN3 555 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 ST13P5Q8NFI4 369 aaPredicted RBP9.1□□□□□ -0.95
VIM-202ENST00000421459 TMEM143Q96AN5 459 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 KLHL5Q96PQ7 755 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 PRRX2Q99811 253 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 MRPL9Q9BYD2 267 aaKnown RBP9.1□□□□□ -0.95
VIM-202ENST00000421459 IFT122Q9HBG6 1241 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 CHST12Q9NRB3 414 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 GJB4Q9NTQ9 266 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 DACT1Q9NYF0 836 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 PCDHA4Q9UN74 947 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 PCDHB2Q9Y5E7 798 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 KMT2EQ8IZD2 1858 aa9.1□□□□□ -0.95
VIM-202ENST00000421459 NARSO43776 548 aaKnown RBP9.09□□□□□ -0.95
VIM-202ENST00000421459 N4BP1O75113 896 aaKnown RBP9.09□□□□□ -0.95
VIM-202ENST00000421459 CNPP09543 421 aaKnown RBP9.09□□□□□ -0.95
VIM-202ENST00000421459 NPR3P17342 541 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 SFPQP23246 707 aaKnown RBP eCLIP9.09□□□□□ -0.95
VIM-202ENST00000421459 KLRC2P26717 231 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 HOXA11P31270 313 aaPredicted RBP9.09□□□□□ -0.95
VIM-202ENST00000421459 DNM2P50570 870 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 SSRP1Q08945 709 aaKnown RBP9.09□□□□□ -0.95
VIM-202ENST00000421459 LETM2Q2VYF4 491 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 ATAT1Q5SQI0 421 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 KIAA1841Q6NSI8 718 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 GLB1LQ6UWU2 654 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 CENPQQ7L2Z9 268 aaPredicted RBP9.09□□□□□ -0.95
VIM-202ENST00000421459 CABP7Q86V35 215 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 UBALD2Q8IYN6 164 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 ZDHHC14Q8IZN3 488 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 BLIDQ8IZY5 108 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 TDRD5Q8NAT2 981 aaKnown RBP9.09□□□□□ -0.95
VIM-202ENST00000421459 FLCNQ8NFG4 579 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 CCDC148Q8NFR7 591 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 PRPF31Q8WWY3 499 aaKnown RBP9.09□□□□□ -0.95
VIM-202ENST00000421459 RSAD2Q8WXG1 361 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 SNX27Q96L92 541 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 MBOAT7Q96N66 472 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 NECTIN4Q96NY8 510 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 RNF39Q9H2S5 420 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 RGL1Q9NZL6 768 aa9.09□□□□□ -0.95
VIM-202ENST00000421459 DDX25Q9UHL0 483 aaKnown RBP9.09□□□□□ -0.95
VIM-202ENST00000421459 A0A087WWV3 80 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 NRP1O14786 923 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 LILRB3O75022 631 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 ZNF623O75123 536 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 SPATA31D3P0C874 917 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 CLCN4P51793 760 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 POLGP54098 1239 aaPredicted RBP9.08□□□□□ -0.96
VIM-202ENST00000421459 EVCP57679 992 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 PSMC5P62195 406 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 EARS2Q5JPH6 523 aaKnown RBP9.08□□□□□ -0.96
VIM-202ENST00000421459 CWF19L1Q69YN2 538 aaKnown RBP9.08□□□□□ -0.96
VIM-202ENST00000421459 ASTLQ6HA08 431 aaPredicted RBP9.08□□□□□ -0.96
VIM-202ENST00000421459 SPATA31D4Q6ZUB0 917 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 FRMD5Q7Z6J6 570 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 GPR149Q86SP6 731 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 ZNF410Q86VK4 478 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 ZNF710Q8N1W2 664 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 FBXL16Q8N461 479 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 SMG8Q8ND04 991 aaKnown RBP9.08□□□□□ -0.96
VIM-202ENST00000421459 RDM1Q8NG50 284 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 OXER1Q8TDS5 423 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 RABGGTAQ92696 567 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 CPB2Q96IY4 423 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 CEP170P1Q96L14 293 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 B3GALT6Q96L58 329 aa9.08□□□□□ -0.96
VIM-202ENST00000421459 TRAIPQ9BWF2 469 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms