RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 HMGCRP04035 888 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 COL6A1P12109 1028 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 KCNQ1P51787 676 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 SLC5A3P53794 718 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 GTF2H3Q13889 308 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 NOLC1Q14978 699 aaKnown RBP eCLIP6.01□□□□□ -1.45
VPS54-204ENST00000416400 SLC4A10Q6U841 1118 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 KCNK18Q7Z418 384 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 PLEKHH3Q7Z736 793 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 RTKN2Q8IZC4 609 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 LGI4Q8N135 537 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 AUTS2Q8WXX7 1259 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 LRGUKQ96M69 825 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 CARD11Q9BXL7 1154 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 CHMP4AQ9BY43 222 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 KCTD10Q9H3F6 313 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 PRDM11Q9NQV5 511 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 ZNF277Q9NRM2 450 aaPredicted RBP6.01□□□□□ -1.45
VPS54-204ENST00000416400 OBP2AQ9NY56 170 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 KCMF1Q9P0J7 381 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 SAE1Q9UBE0 346 aaPredicted RBP6.01□□□□□ -1.45
VPS54-204ENST00000416400 ARID4BQ4LE39 1312 aaPredicted RBP6□□□□□ -1.45
VPS54-204ENST00000416400 KLHL18O94889 574 aa6□□□□□ -1.45
VPS54-204ENST00000416400 MYL1P05976 194 aa6□□□□□ -1.45
VPS54-204ENST00000416400 HSPA6P17066 643 aa6□□□□□ -1.45
VPS54-204ENST00000416400 JAG1P78504 1218 aa6□□□□□ -1.45
VPS54-204ENST00000416400 USP10Q14694 798 aaKnown RBP6□□□□□ -1.45
VPS54-204ENST00000416400 DGKDQ16760 1214 aa6□□□□□ -1.45
VPS54-204ENST00000416400 RRP12Q5JTH9 1297 aaKnown RBP6□□□□□ -1.45
VPS54-204ENST00000416400 KANK2Q63ZY3 851 aa6□□□□□ -1.45
VPS54-204ENST00000416400 LCNL1Q6ZST4 164 aa6□□□□□ -1.45
VPS54-204ENST00000416400 EPM2AIP1Q7L775 607 aaPredicted RBP6□□□□□ -1.45
VPS54-204ENST00000416400 KANSL1Q7Z3B3 1105 aa6□□□□□ -1.45
VPS54-204ENST00000416400 RALYLQ86SE5 291 aaKnown RBP6□□□□□ -1.45
VPS54-204ENST00000416400 DGKHQ86XP1 1220 aa6□□□□□ -1.45
VPS54-204ENST00000416400 MIER2Q8N344 545 aa6□□□□□ -1.45
VPS54-204ENST00000416400 PARD6AQ9NPB6 346 aa6□□□□□ -1.45
VPS54-204ENST00000416400 NMRK2Q9NPI5 230 aa6□□□□□ -1.45
VPS54-204ENST00000416400 RCAN3Q9UKA8 241 aa6□□□□□ -1.45
VPS54-204ENST00000416400 CDC42EP3Q9UKI2 254 aa6□□□□□ -1.45
VPS54-204ENST00000416400 NUMBLQ9Y6R0 609 aa6□□□□□ -1.45
VPS54-204ENST00000416400 ERC2O15083 957 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 NOBOXO60393 691 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 PEX14O75381 377 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 PFKMP08237 780 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 C5AR1P21730 350 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 LPOP22079 712 aaPredicted RBP5.99□□□□□ -1.45
VPS54-204ENST00000416400 XPAP23025 273 aaPredicted RBP5.99□□□□□ -1.45
VPS54-204ENST00000416400 AKAP5P24588 427 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 ETV4P43268 484 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 ADKP55263 362 aaKnown RBP5.99□□□□□ -1.45
VPS54-204ENST00000416400 LGALS4P56470 323 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 FZD5Q13467 585 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 TOP3AQ13472 1001 aaPredicted RBP5.99□□□□□ -1.45
VPS54-204ENST00000416400 SPIDRQ14159 915 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 MUM1Q2TAK8 710 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 MAP9Q49MG5 647 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 ZMAT1Q5H9K5 638 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 IFIT1BQ5T764 474 aaKnown RBP5.99□□□□□ -1.45
VPS54-204ENST00000416400 MBNL2Q5VZF2 373 aaKnown RBP5.99□□□□□ -1.45
VPS54-204ENST00000416400 UNQ6494/PRO21346Q6UXR6 183 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 ZDHHC14Q8IZN3 488 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 SYT8Q8NBV8 401 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 FEZF2Q8TBJ5 459 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 AJUBAQ96IF1 538 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 POLR3GLQ9BT43 218 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 ARNT2Q9HBZ2 717 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 ANLNQ9NQW6 1124 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 DPP7Q9UHL4 492 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 ADAM29Q9UKF5 820 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 FAM184BQ9ULE4 1060 aa5.99□□□□□ -1.45
VPS54-204ENST00000416400 NDUFS2O75306 463 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 MAFO75444 373 aaPredicted RBP5.98□□□□□ -1.45
VPS54-204ENST00000416400 OFD1O75665 1012 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 PCDH8O95206 1070 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 RRADP55042 308 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 SESN2P58004 480 aaPredicted RBP5.98□□□□□ -1.45
VPS54-204ENST00000416400 PPARAQ07869 468 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 TRIM25Q14258 630 aaKnown RBP5.98□□□□□ -1.45
VPS54-204ENST00000416400 EIF4HQ15056 248 aaKnown RBP5.98□□□□□ -1.45
VPS54-204ENST00000416400 SURF1Q15526 300 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 PPP4R4Q6NUP7 873 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 KSR2Q6VAB6 950 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 KBTBD2Q8IY47 623 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 RSAD2Q8WXG1 361 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 HIST1H2AHQ96KK5 128 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 KCNC2Q96PR1 638 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 SLC2A13Q96QE2 648 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 HIST1H2AJQ99878 128 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 NOL10Q9BSC4 688 aaKnown RBP5.98□□□□□ -1.45
VPS54-204ENST00000416400 MTG2Q9H4K7 406 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 IFT122Q9HBG6 1241 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 JADE2Q9NQC1 790 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 MYPNQ86TC9 1320 aa5.98□□□□□ -1.45
VPS54-204ENST00000416400 B4GALT4O60513 344 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 SLC16A1P53985 500 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 CDK17Q00537 523 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 KIF23Q02241 960 aaPredicted RBP5.97□□□□□ -1.45
VPS54-204ENST00000416400 UAP1L1Q3KQV9 507 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 ARHGAP29Q52LW3 1261 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms