RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TAF8Q7Z7C8 310 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 OR8H2Q8N162 312 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 ARL8AQ96BM9 186 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 SERHL2Q9H4I8 314 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 SERHLQ9NQF3 203 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 PHF8Q9UPP1 1060 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 FAM26FQ5R3K3 315 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 TMEM206Q9H813 350 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 MED23Q9ULK4 1368 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 TSPAN9O75954 239 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 IL12RB1P42701 662 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 RABGAP1LQ5R372 815 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 C7orf31Q8N865 590 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 CMTM5Q96DZ9 223 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 ACSBG1Q96GR2 724 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 hCG_1642624A0A1W2PR95 340 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 GCFC2P16383 781 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 DSG1Q02413 1049 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 PLOD1Q02809 727 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 KIRREL3Q8IZU9 778 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 DDX17Q92841 729 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 GLMNQ92990 594 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 KMT5AQ9NQR1 393 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 NDFIP2Q9NV92 336 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 MAN2A1Q16706 1144 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 MCRS1Q96EZ8 462 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 DTNAQ9Y4J8 743 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 SNX14Q9Y5W7 946 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 MAP3K5Q99683 1374 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 GGCXP38435 758 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 HNRNPH2P55795 449 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 SURF1Q15526 300 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 DNAL1Q4LDG9 190 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 NAALADL2Q58DX5 795 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 RNF135Q8IUD6 432 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 RHOT2Q8IXI1 618 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 TTC13Q8NBP0 860 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 TMA16Q96EY4 203 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 SLC13A1Q9BZW2 595 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 WWP1Q9H0M0 922 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 AFF4Q9UHB7 1163 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 CCDC188H7C350 402 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 WLSQ5T9L3 541 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 GPR141Q7Z602 305 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 CALML6Q8TD86 181 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 TMA7Q9Y2S6 64 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 ZNF197O14709 1029 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 MLNP12872 115 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 CMA1P23946 247 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 COPB2P35606 906 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 BCAP31P51572 246 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 CCDC144BQ3MJ40 725 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 LRRC59Q96AG4 307 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 TSPOAP1O95153 1857 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 NCOA1Q15788 1441 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 WASLO00401 505 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 NNMTP40261 264 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 KLHL17Q6TDP4 642 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 DPP10Q8N608 796 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 PSD3Q9NYI0 1048 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 FRMPD2Q68DX3 1309 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 MROH5Q6ZUA9 1318 aa14.11□□□□□ -0.15
CCDC88A-204ENST00000413716 TNNI3KQ59H18 835 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 SLC10A5Q5PT55 438 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 SFR1Q86XK3 245 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 PCYOX1LQ8NBM8 494 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 RNASE11Q8TAA1 199 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 L3MBTL3Q96JM7 780 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 GALNT8Q9NY28 637 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 FPGT-TNNI3KV9GXZ4 949 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 PLCH2O75038 1416 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 ENO1P06733 434 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 ITGA6P23229 1130 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 TGFBRAP1Q8WUH2 860 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 ING3Q9NXR8 418 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 SERPINB13Q9UIV8 391 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 CENPXA8MT69 81 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 MFN2O95140 757 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 AKAP5P24588 427 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 NDUFA8P51970 172 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 LAMB3Q13751 1172 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 LRRC31Q6UY01 552 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 CCDC81Q6ZN84 652 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 HES6Q96HZ4 224 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 MYL1P05976 194 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 FYNP06241 537 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 GUCA1AP43080 201 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 GPR1P46091 355 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 TTC33Q6PID6 262 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 PPP1R36Q96LQ0 422 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 AK8Q96MA6 479 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 HDHD2Q9H0R4 259 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 TRIQKQ629K1 86 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 NLRP14Q86W24 1093 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 RHPN2Q8IUC4 686 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 FOPNLQ96NB1 174 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 PANX2Q96RD6 677 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 ELF1P32519 619 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 NUP107P57740 925 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms