RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 PCDHB4Q9Y5E5 795 aa9.21□□□□□ -0.93
SYNE1-211ENST00000413186 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.21□□□□□ -0.93
SYNE1-211ENST00000413186 LGALS16A8MUM7 142 aa9.21□□□□□ -0.93
SYNE1-211ENST00000413186 CA12O43570 354 aa9.21□□□□□ -0.93
SYNE1-211ENST00000413186 GUCY2CP25092 1073 aa9.21□□□□□ -0.93
SYNE1-211ENST00000413186 GPC3P51654 580 aa9.21□□□□□ -0.93
SYNE1-211ENST00000413186 VAMP7P51809 220 aa9.21□□□□□ -0.93
SYNE1-211ENST00000413186 PRMT2P55345 433 aa9.21□□□□□ -0.93
SYNE1-211ENST00000413186 CYP4F22Q6NT55 531 aa9.21□□□□□ -0.93
SYNE1-211ENST00000413186 SYCE1Q8N0S2 351 aa9.21□□□□□ -0.93
SYNE1-211ENST00000413186 PGBD4Q96DM1 585 aa9.21□□□□□ -0.93
SYNE1-211ENST00000413186 SGIP1Q9BQI5 828 aa9.21□□□□□ -0.93
SYNE1-211ENST00000413186 POLD4Q9HCU8 107 aa9.21□□□□□ -0.93
SYNE1-211ENST00000413186 COL5A3P25940 1745 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-211ENST00000413186 SPOPO43791 374 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 ADCY3O60266 1144 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 CABYRO75952 493 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 TFRCP02786 760 aaKnown RBP9.21□□□□□ -0.94
SYNE1-211ENST00000413186 ADKP55263 362 aaKnown RBP9.21□□□□□ -0.94
SYNE1-211ENST00000413186 SMC1AQ14683 1233 aaKnown RBP9.21□□□□□ -0.94
SYNE1-211ENST00000413186 ZNF569Q5MCW4 686 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 TLK2Q86UE8 772 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 CCDC117Q8IWD4 279 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-211ENST00000413186 LRRC45Q96CN5 670 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 NAP1L3Q99457 506 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-211ENST00000413186 MED10Q9BTT4 135 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 MKNK1Q9BUB5 465 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 IFIH1Q9BYX4 1025 aaKnown RBP9.21□□□□□ -0.94
SYNE1-211ENST00000413186 UBR3Q6ZT12 1888 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 MED7O43513 233 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 NAMPTP43490 491 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 KIAA0753Q2KHM9 967 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 KIAA1524Q8TCG1 905 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 MIPOL1Q8TD10 442 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 SH2D3AQ9BRG2 576 aa9.21□□□□□ -0.94
SYNE1-211ENST00000413186 RBAKQ9NYW8 714 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-211ENST00000413186 TRIM49BA6NDI0 452 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 H2AFZP0C0S5 128 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 RFX1P22670 979 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 DGKZQ13574 1117 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 CLUL1Q15846 466 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 LY6KQ17RY6 165 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 KRT39Q6A163 491 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 ILDR2Q71H61 639 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 H2AFVQ71UI9 128 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 TRIM11Q96F44 468 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 XPNPEP3Q9NQH7 507 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 DIS3Q9Y2L1 958 aaKnown RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 DAAM1Q9Y4D1 1078 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 SLX4Q8IY92 1834 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 BCORQ6W2J9 1755 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 NPHP3-ACAD11A0A0J9YXS1 232 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 TMEM110-MUSTN1A8MSY1 372 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 RPS6KA5O75582 802 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 UBA1P22314 1058 aaKnown RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 STK4Q13043 487 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 COL9A3Q14050 684 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 DUOXA2Q1HG44 320 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 KIAA1841Q6NSI8 718 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 VSTM4Q8IW00 320 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 U2AF1L4Q8WU68 220 aaKnown RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 ACAP3Q96P50 834 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 INPP4AQ96PE3 977 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 MYO1AQ9UBC5 1043 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 PIN4Q9Y237 131 aaKnown RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 ATP8B3O60423 1300 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 DCDC2CA8MYV0 355 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 SPATA31C2B4DYI2 1134 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 PSMD10O75832 226 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 ETF1P62495 437 aaKnown RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 CBX1P83916 185 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 KCNH2Q12809 1159 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 CELF3Q5SZQ8 465 aaKnown RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 TAF2Q6P1X5 1199 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 PPFIBP2Q8ND30 876 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 BRI3BPQ8WY22 251 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 SECISBP2LQ93073 1101 aaKnown RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 NXF1Q9UBU9 619 aaKnown RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 MTUS1Q9ULD2 1270 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 DDX60Q8IY21 1712 aaKnown RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 HMGB1P1B2RPK0 211 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 MAPTP10636 758 aaKnown RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 SKIP12755 728 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 CASP14P31944 242 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 NSFP46459 744 aaKnown RBP9.2□□□□□ -0.94
SYNE1-211ENST00000413186 BFSP2Q13515 415 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 TMCO4Q5TGY1 634 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 DSTYKQ6XUX3 929 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 ENOSF1Q7L5Y1 443 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 UBL4BQ8N7F7 174 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 ST7Q9NRC1 585 aa9.2□□□□□ -0.94
SYNE1-211ENST00000413186 LRP5O75197 1615 aa9.19□□□□□ -0.94
SYNE1-211ENST00000413186 RIOK3O14730 519 aaKnown RBP9.19□□□□□ -0.94
SYNE1-211ENST00000413186 TLR2O60603 784 aa9.19□□□□□ -0.94
SYNE1-211ENST00000413186 PPP1R11O60927 126 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-211ENST00000413186 TBXAS1P24557 533 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-211ENST00000413186 KLRC1P26715 233 aa9.19□□□□□ -0.94
SYNE1-211ENST00000413186 RARRES1P49788 294 aa9.19□□□□□ -0.94
SYNE1-211ENST00000413186 MAP3K7CLP57077 242 aa9.19□□□□□ -0.94
SYNE1-211ENST00000413186 MAP3K10Q02779 954 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms