RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CENPCQ03188 943 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 PTK2BQ14289 1009 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 HIC1Q14526 733 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 TRAPPC11Q7Z392 1133 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 MAML1Q92585 1016 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 TADA1Q96BN2 335 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 MSTO1Q9BUK6 570 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 CALN1Q9BXU9 219 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 GIMAP4Q9NUV9 329 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 TUBGCP4Q9UGJ1 667 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 UBN2Q6ZU65 1347 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 KDM5CP41229 1560 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 ORC4O43929 436 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 FAM107AO95990 144 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 RPLP2P05387 115 aaKnown RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 RECQLP46063 649 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 MMP14P50281 582 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 EIF2B5Q13144 721 aaKnown RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 MTA1Q13330 715 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 ZNF827Q17R98 1081 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 KNOP1Q1ED39 458 aaKnown RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 KIF19Q2TAC6 998 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 CAPRIN2Q6IMN6 1127 aaKnown RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 XRRA1Q6P2D8 792 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 ANKS3Q6ZW76 656 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 FOPNLQ96NB1 174 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 ELAC2Q9BQ52 826 aaKnown RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 CCSER1Q9C0I3 900 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 EPN3Q9H201 632 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 UBN1Q9NPG3 1134 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 PARVAQ9NVD7 372 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 PPEF1O14829 653 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 HGSO14964 777 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 ZBTB5O15062 677 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 NR3C1P04150 777 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 HNRNPH2P55795 449 aaKnown RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 GRM1Q13255 1194 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 TMED1Q13445 227 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 GRM4Q14833 912 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 MTFR1Q15390 333 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 ZC3H18Q86VM9 953 aaKnown RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 RSPH1Q8WYR4 309 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 EPS8L2Q9H6S3 715 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 LMCD1Q9NZU5 365 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 HEG1Q9ULI3 1381 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 ADGRG1Q9Y653 693 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 SOWAHDA6NJG2 315 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 INO80B-WBP1J3KQ70 363 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 TRPA1O75762 1119 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 P4HBP07237 508 aaKnown RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 STAT3P40763 770 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 TSPY1Q01534 308 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 ZNF555Q8NEP9 628 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 SKA2Q8WVK7 121 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 SNX19Q92543 992 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 GPKOWQ92917 476 aaPredicted RBP eCLIP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 CNBD2Q96M20 576 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 SUGCTQ9HAC7 445 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 GINS2Q9Y248 185 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 PNPLA7Q6ZV29 1317 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 M0R3G1 203 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 RTN2O75298 545 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 PPP1R37O75864 691 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 FTCDO95954 541 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 MAPK6Q16659 721 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 ANO4Q32M45 955 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 EDRF1Q3B7T1 1238 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 EFHC2Q5JST6 749 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 NUDT18Q6ZVK8 323 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 CYFIP1Q7L576 1253 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 TBC1D1Q86TI0 1168 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 RNF169Q8NCN4 708 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 ACRBPQ8NEB7 543 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 PAIP2BQ9ULR5 123 aaKnown RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 PCDHGB4Q9UN71 923 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 FARP1Q9Y4F1 1045 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 USP6P35125 1406 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 RNF103-CHMP3A0A140T963 221 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 H7C1W4 665 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 DAB1O75553 588 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 BRAFP15056 766 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 CASP2P42575 452 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 ROR1Q01973 937 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 CYLC2Q14093 348 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 KHDRBS2Q5VWX1 349 aaKnown RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 HEATR6Q6AI08 1181 aaKnown RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 SPATA21Q7Z572 469 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 NUDCD3Q8IVD9 361 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 FMR1NBQ8N0W7 255 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 RIN3Q8TB24 985 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 ZNF526Q8TF50 670 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 USP6NLQ92738 828 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 SMYD2Q9NRG4 433 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 KLHL8Q9P2G9 620 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 AKT3Q9Y243 479 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 PRDM15P57071 1507 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 USP42Q9H9J4 1324 aaKnown RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 H7C0S8 307 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 PALMO75781 387 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 129.7 ms