RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.81□□□□□ -0.84
LIG4-202ENST00000405925 ABHD16BQ9H3Z7 469 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 LIMA1Q9UHB6 759 aaKnown RBP9.81□□□□□ -0.84
LIG4-202ENST00000405925 MYPNQ86TC9 1320 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 PEX10O60683 326 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 TCP1P17987 556 aaKnown RBP9.81□□□□□ -0.84
LIG4-202ENST00000405925 BMS1Q14692 1282 aaKnown RBP9.81□□□□□ -0.84
LIG4-202ENST00000405925 LONRF2Q1L5Z9 754 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 KCNK18Q7Z418 384 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 ELOA2Q8IYF1 753 aaPredicted RBP9.81□□□□□ -0.84
LIG4-202ENST00000405925 BBXQ8WY36 941 aaPredicted RBP9.81□□□□□ -0.84
LIG4-202ENST00000405925 SLC5A5Q92911 643 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 WNK4Q96J92 1243 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 IGKV6D-41A0A0C4DH26 115 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 H3BRB1 525 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 ASAP2O43150 1006 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 IFNB1P01574 187 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 SOX10P56693 466 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 HADHQ16836 314 aaKnown RBP9.81□□□□□ -0.84
LIG4-202ENST00000405925 RSRC2Q7L4I2 434 aaKnown RBP9.81□□□□□ -0.84
LIG4-202ENST00000405925 HAS1Q92839 578 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 TUT1Q9H6E5 874 aaKnown RBP9.81□□□□□ -0.84
LIG4-202ENST00000405925 STIM2Q9P246 746 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 RIPK3Q9Y572 518 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 LAMB4A4D0S4 1761 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 A0A1B0GTH6 734 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 PIK3CDO00329 1044 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 ZBTB39O15060 712 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 SLITRK3O94933 977 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 CYP3A4P08684 503 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 KLRC1P26715 233 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 CYP2C19P33261 490 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 ELF2Q15723 593 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 DNAJC24Q6P3W2 148 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 NIPA1Q7RTP0 329 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 PASD1Q8IV76 773 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 PRPF31Q8WWY3 499 aaKnown RBP9.8□□□□□ -0.84
LIG4-202ENST00000405925 ACAP3Q96P50 834 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 MTMR9Q96QG7 549 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 LRRC4Q9HBW1 653 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 NUP98P52948 1817 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 ATRNL1Q5VV63 1379 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 A0A1W2PQC6 194 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 TLDC2A0PJX2 215 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 RRN3P2A6NIE6 340 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 EIF3DO15371 548 aaKnown RBP eCLIP9.8□□□□□ -0.84
LIG4-202ENST00000405925 MED7O43513 233 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 ZNF286BP0CG31 522 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 ITGB5P18084 799 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 MUTP22033 750 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 NPTX2P47972 431 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 RNF180Q86T96 592 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 CCDC155Q8N6L0 562 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 LRRC45Q96CN5 670 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 AGPAT3Q9NRZ7 376 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 PRMT7Q9NVM4 692 aaPredicted RBP9.8□□□□□ -0.84
LIG4-202ENST00000405925 PCDHA13Q9Y5I0 950 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 SMIM23A6NLE4 172 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 FTCDO95954 541 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 TUBBP07437 444 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 ADCYAP1R1P41586 468 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 ATF7IP2Q5U623 682 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 OR6B2Q6IFH4 312 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 EP400NLQ6ZTU2 488 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 PDLIM2Q96JY6 352 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 TSPYL1Q9H0U9 437 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 PRDM5Q9NQX1 630 aaPredicted RBP9.8□□□□□ -0.84
LIG4-202ENST00000405925 TTLL3Q9Y4R7 772 aa9.8□□□□□ -0.84
LIG4-202ENST00000405925 SLC16A3O15427 465 aaKnown RBP9.79□□□□□ -0.84
LIG4-202ENST00000405925 HUS1O60921 280 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 MOCS3O95396 460 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 PTGER2P43116 358 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 VPS41P49754 854 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 INHBEP58166 350 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 DEFB115Q30KQ5 88 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 TRIM11Q96F44 468 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 FAM204AQ9H8W3 233 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 C17orf75Q9HAS0 396 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 BLOC1S4Q9NUP1 217 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 RAB20Q9NX57 234 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 TBX20Q9UMR3 447 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 SNCAIPQ9Y6H5 919 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 BTAF1O14981 1849 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 ARHGEF37A1IGU5 675 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 KRIT1O00522 736 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 RPS6KA5O75582 802 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 ACTN1P12814 892 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 UBA1P22314 1058 aaKnown RBP9.79□□□□□ -0.84
LIG4-202ENST00000405925 FMO5P49326 533 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 PPP2R5CQ13362 524 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 KRT81Q14533 505 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 RRP1BQ14684 758 aaKnown RBP9.79□□□□□ -0.84
LIG4-202ENST00000405925 WDR72Q3MJ13 1102 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 SEZ6Q53EL9 994 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 LBX2Q6XYB7 198 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 VTA1Q9NP79 307 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 C10orf71Q711Q0 1435 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 PLIN4Q96Q06 1357 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 ZBBXA8MT70 800 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 E7EVH7 732 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms