RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 C1orf122Q6ZSJ8 110 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 STK32CQ86UX6 486 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 ZNF227Q86WZ6 799 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 Q8N1Y9 231 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 OSBP2Q969R2 916 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 EIF2AK1Q9BQI3 630 aaKnown RBP4.92□□□□□ -1.62
HMGB1-204ENST00000399489 TMEM168Q9H0V1 697 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 NMRK2Q9NPI5 230 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 RIC8AQ9NPQ8 531 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 C1orf112Q9NSG2 853 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 A6NNZ2 444 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 J3KRW8 73 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 SCG5P05408 212 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 ADCYAP1R1P41586 468 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 KRT85P78386 507 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 NUCB1Q02818 461 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 TBX2Q13207 712 aaPredicted RBP4.91□□□□□ -1.62
HMGB1-204ENST00000399489 KLF1Q13351 362 aaPredicted RBP4.91□□□□□ -1.62
HMGB1-204ENST00000399489 PDE1CQ14123 709 aaPredicted RBP4.91□□□□□ -1.62
HMGB1-204ENST00000399489 TRIM14Q14142 442 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 STEAP3Q658P3 488 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 MZT2BQ6NZ67 158 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 RSRC2Q7L4I2 434 aaKnown RBP4.91□□□□□ -1.62
HMGB1-204ENST00000399489 OTOP3Q7RTS5 596 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 HSPBAP1Q96EW2 488 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 TMEM209Q96SK2 561 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 RBM15Q96T37 977 aaKnown RBP eCLIP4.91□□□□□ -1.62
HMGB1-204ENST00000399489 CRB3Q9BUF7 120 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 OSBPL5Q9H0X9 879 aaPredicted RBP4.91□□□□□ -1.62
HMGB1-204ENST00000399489 EPB41L1Q9H4G0 881 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 TRMT13Q9NUP7 481 aaKnown RBP4.91□□□□□ -1.62
HMGB1-204ENST00000399489 CLDND1Q9NY35 253 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 DTLQ9NZJ0 730 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 DNM3Q9UQ16 869 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 PCDHA2Q9Y5H9 948 aa4.91□□□□□ -1.62
HMGB1-204ENST00000399489 KRIT1O00522 736 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 TPP1O14773 563 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 ORC4O43929 436 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 EFCAB14O75071 495 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 CAPNS1P04632 268 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 FLT3P36888 993 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 GRIA2P42262 883 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 SCNN1BP51168 640 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 GABREP78334 506 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 ODF1Q14990 250 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 NSMFQ6X4W1 530 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 ANKRD23Q86SG2 305 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 MYLK4Q86YV6 388 aaPredicted RBP4.9□□□□□ -1.62
HMGB1-204ENST00000399489 NAXEQ8NCW5 288 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 GIMAP8Q8ND71 665 aaPredicted RBP4.9□□□□□ -1.62
HMGB1-204ENST00000399489 C1orf162Q8NEQ5 155 aaPredicted RBP4.9□□□□□ -1.62
HMGB1-204ENST00000399489 PHOSPHO1Q8TCT1 267 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 SGCZQ96LD1 299 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 C8orf49Q96NF6 230 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 TAAR9Q96RI9 348 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 ORAI3Q9BRQ5 295 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 ISCA1Q9BUE6 129 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 VTA1Q9NP79 307 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 RASSF1Q9NS23 344 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 NUB1Q9Y5A7 615 aa4.9□□□□□ -1.62
HMGB1-204ENST00000399489 TCRBV16S1A1N1A0A5B0 115 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 ZNF891A8MT65 544 aaPredicted RBP4.89□□□□□ -1.63
HMGB1-204ENST00000399489 PRODHO43272 600 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 LAMTOR5O43504 91 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 TLR5O60602 858 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 TESK1Q15569 626 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 CDC37Q16543 378 aaPredicted RBP4.89□□□□□ -1.63
HMGB1-204ENST00000399489 CDCA2Q69YH5 1023 aaPredicted RBP4.89□□□□□ -1.63
HMGB1-204ENST00000399489 TTLL5Q6EMB2 1281 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 PNMA8AQ86V59 439 aaPredicted RBP4.89□□□□□ -1.63
HMGB1-204ENST00000399489 SLC41A1Q8IVJ1 513 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 TRIM48Q8IWZ4 208 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 RCBTB1Q8NDN9 531 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 SLC35G2Q8TBE7 412 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 CCT6BQ92526 530 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 DVL3Q92997 716 aaPredicted RBP4.89□□□□□ -1.63
HMGB1-204ENST00000399489 PPM1MQ96MI6 270 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 FTSJ1Q9UET6 329 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 CROTQ9UKG9 612 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 GPR52Q9Y2T5 361 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 A0A1B0GVC2 190 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 NPEPPSL1A6NEC2 478 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 AKAP8O43823 692 aaKnown RBP4.89□□□□□ -1.63
HMGB1-204ENST00000399489 DHX16O60231 1041 aaKnown RBP4.89□□□□□ -1.63
HMGB1-204ENST00000399489 TGFB3P10600 412 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 HSD3B1P14060 373 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 IL13P35225 146 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 GRK6P43250 576 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 MAPK9P45984 424 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 DSG1Q02413 1049 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 CR1LQ2VPA4 569 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 EMC4Q5J8M3 183 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 WDR45BQ5MNZ6 344 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 PRR31Q5SQ13 230 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 PIK3R6Q5UE93 754 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 ARMC3Q5W041 872 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 TSHZ3Q63HK5 1081 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 CATIPQ7Z7H3 387 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 NLRP10Q86W26 655 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 SPATA5Q8NB90 893 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms