RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 JPH2Q9BR39 696 aaPredicted RBP13.74□□□□□ -0.21
SHMT1-205ENST00000395684 ACTR5Q9H9F9 607 aaPredicted RBP13.74□□□□□ -0.21
SHMT1-205ENST00000395684 TUFT1Q9NNX1 390 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 FRMD4BQ9Y2L6 1034 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 PSMD10O75832 226 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 PTGIRP43119 386 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 MARCKSL1P49006 195 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 KIF22Q14807 665 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 PPP2R5EQ16537 467 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 HS2ST1Q7LGA3 356 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 GMCL1P1Q8NEA9 526 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 ZDHHC15Q96MV8 337 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 NCAPGQ9BPX3 1015 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 ADAM7Q9H2U9 754 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 CNOT10Q9H9A5 744 aaKnown RBP13.74□□□□□ -0.21
SHMT1-205ENST00000395684 GRHL1Q9NZI5 618 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 CHORDC1Q9UHD1 332 aaPredicted RBP13.74□□□□□ -0.21
SHMT1-205ENST00000395684 FAM187AA6NFU0 413 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 CTNND1O60716 968 aaKnown RBP13.73□□□□□ -0.21
SHMT1-205ENST00000395684 ZNF131P52739 623 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 DRG2P55039 364 aaKnown RBP13.73□□□□□ -0.21
SHMT1-205ENST00000395684 GSCP56915 257 aaPredicted RBP13.73□□□□□ -0.21
SHMT1-205ENST00000395684 MYL7Q01449 175 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 DHX34Q14147 1143 aaKnown RBP13.73□□□□□ -0.21
SHMT1-205ENST00000395684 SLC29A2Q14542 456 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 PPP2R5AQ15172 486 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 LRCH2Q5VUJ6 765 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 TMEM179Q6ZVK1 233 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 ARMC9Q7Z3E5 817 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 KIAA0825Q8IV33 1275 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 KCTD17Q8N5Z5 321 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 PRELID2Q8N945 189 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 BANK1Q8NDB2 785 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 NEK9Q8TD19 979 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 CENPTQ96BT3 561 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 HOOK2Q96ED9 719 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 CHMP6Q96FZ7 201 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 AGPAT1Q99943 283 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 SIPA1L1O43166 1804 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 SRCAPQ6ZRS2 3230 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 RPTORQ8N122 1335 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 TLDC2A0PJX2 215 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 PIK3CDO00329 1044 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 CCDC172P0C7W6 258 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 BMP3P12645 472 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 KRT13P13646 458 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 CHN1P15882 459 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 SCTRP47872 440 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 DLG4P78352 724 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 IRX3P78415 501 aaPredicted RBP13.73□□□□□ -0.21
SHMT1-205ENST00000395684 SETQ01105 290 aaPredicted RBP13.73□□□□□ -0.21
SHMT1-205ENST00000395684 BFSP1Q12934 665 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 ODR4Q5SWX8 454 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 CCDC91Q7Z6B0 441 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 HOOK3Q86VS8 718 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 FUKQ8N0W3 1084 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 SPICE1Q8N0Z3 855 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 CCT6BQ92526 530 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 ZKSCAN4Q969J2 545 aaPredicted RBP13.73□□□□□ -0.21
SHMT1-205ENST00000395684 ZNF317Q96PQ6 595 aaPredicted RBP13.73□□□□□ -0.21
SHMT1-205ENST00000395684 FAM129AQ9BZQ8 928 aa13.73□□□□□ -0.21
SHMT1-205ENST00000395684 A0A1W2PRG0 241 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 EXOC3O60645 756 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 ATP2C2O75185 946 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 FTLP02792 175 aaPredicted RBP13.72□□□□□ -0.21
SHMT1-205ENST00000395684 UBXN2AP68543 259 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 IFI35P80217 286 aaPredicted RBP13.72□□□□□ -0.21
SHMT1-205ENST00000395684 PPP2R5CQ13362 524 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 ABCB5Q2M3G0 1257 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 TTC27Q6P3X3 843 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 PGM2Q96G03 612 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 SEMA4AQ9H3S1 761 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 A1CFQ9NQ94 594 aaKnown RBP13.72□□□□□ -0.21
SHMT1-205ENST00000395684 PRR12Q9ULL5 1215 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 PCDHA3Q9Y5H8 950 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 LRRC37AA6NMS7 1700 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 SMCHD1A6NHR9 2005 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 MMP13P45452 471 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 RPL21P46778 160 aaKnown RBP13.72□□□□□ -0.21
SHMT1-205ENST00000395684 LACTB2Q53H82 288 aaPredicted RBP13.72□□□□□ -0.21
SHMT1-205ENST00000395684 DENND2CQ68D51 928 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 RHOT2Q8IXI1 618 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 ATXN2LQ8WWM7 1075 aaKnown RBP13.72□□□□□ -0.21
SHMT1-205ENST00000395684 UBE2TQ9NPD8 197 aaPredicted RBP13.72□□□□□ -0.21
SHMT1-205ENST00000395684 HAUS2Q9NVX0 235 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 GEMIN8Q9NWZ8 242 aaKnown RBP13.72□□□□□ -0.21
SHMT1-205ENST00000395684 CTTNBP2NLQ9P2B4 639 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 SEL1LQ9UBV2 794 aa13.72□□□□□ -0.21
SHMT1-205ENST00000395684 SMIM23A6NLE4 172 aa13.71□□□□□ -0.21
SHMT1-205ENST00000395684 CHUKO15111 745 aa13.71□□□□□ -0.21
SHMT1-205ENST00000395684 PHF2O75151 1096 aa13.71□□□□□ -0.21
SHMT1-205ENST00000395684 CFBP00751 764 aa13.71□□□□□ -0.21
SHMT1-205ENST00000395684 HADHBP55084 474 aaKnown RBP13.71□□□□□ -0.21
SHMT1-205ENST00000395684 CYB5D1Q6P9G0 228 aa13.71□□□□□ -0.21
SHMT1-205ENST00000395684 BTNL9Q6UXG8 535 aa13.71□□□□□ -0.21
SHMT1-205ENST00000395684 ARHGEF19Q8IW93 802 aa13.71□□□□□ -0.21
SHMT1-205ENST00000395684 SLC5A5Q92911 643 aa13.71□□□□□ -0.21
SHMT1-205ENST00000395684 IDI2Q9BXS1 227 aa13.71□□□□□ -0.21
SHMT1-205ENST00000395684 AZI2Q9H6S1 392 aa13.71□□□□□ -0.21
SHMT1-205ENST00000395684 DBNDD1Q9H9R9 158 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms