RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 DNA2P51530 1060 aa15.18■□□□□ 0.02
SNCA-204ENST00000394989 CATSPERGQ6ZRH7 1159 aa15.18■□□□□ 0.02
SNCA-204ENST00000394989 MSL3Q8N5Y2 521 aaKnown RBP15.18■□□□□ 0.02
SNCA-204ENST00000394989 LRRC57Q8N9N7 239 aa15.18■□□□□ 0.02
SNCA-204ENST00000394989 CCDC102AQ96A19 550 aa15.18■□□□□ 0.02
SNCA-204ENST00000394989 GPRASP2Q96D09 838 aa15.18■□□□□ 0.02
SNCA-204ENST00000394989 KIFC3Q9BVG8 833 aa15.18■□□□□ 0.02
SNCA-204ENST00000394989 RBM12Q9NTZ6 932 aaKnown RBP15.18■□□□□ 0.02
SNCA-204ENST00000394989 CYP39A1Q9NYL5 469 aa15.18■□□□□ 0.02
SNCA-204ENST00000394989 GPRC5DQ9NZD1 345 aa15.18■□□□□ 0.02
SNCA-204ENST00000394989 HSPBP1Q9NZL4 362 aa15.18■□□□□ 0.02
SNCA-204ENST00000394989 LOC285556D6RIA3 1793 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 ARID2Q68CP9 1835 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 STBD1O95210 358 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 ANXA13P27216 316 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 MATR3P43243 847 aaKnown RBP eCLIP15.17■□□□□ 0.02
SNCA-204ENST00000394989 FAM102BQ5T8I3 360 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 XRRA1Q6P2D8 792 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 SENP7Q9BQF6 1050 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 TSPYL1Q9H0U9 437 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 A1CFQ9NQ94 594 aaKnown RBP15.17■□□□□ 0.02
SNCA-204ENST00000394989 ANKEF1Q9NU02 776 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 ADSSP30520 456 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 SOX10P56693 466 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 CCDC181Q5TID7 509 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 ZNF746Q6NUN9 644 aaPredicted RBP15.17■□□□□ 0.02
SNCA-204ENST00000394989 DLK2Q6UY11 383 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 LEKR1Q6ZMV7 388 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 INTS8Q75QN2 995 aaKnown RBP15.17■□□□□ 0.02
SNCA-204ENST00000394989 CCDC43Q96MW1 224 aaKnown RBP15.17■□□□□ 0.02
SNCA-204ENST00000394989 AFG3L2Q9Y4W6 797 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 PCDHA10Q9Y5I2 948 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 EMSYQ7Z589 1322 aa15.17■□□□□ 0.02
SNCA-204ENST00000394989 C19orf81C9J6K1 198 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 ATP2A1O14983 1001 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 VAMP7P51809 220 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 SLC20A2Q08357 652 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 CCNI2Q6ZMN8 369 aaPredicted RBP15.16■□□□□ 0.02
SNCA-204ENST00000394989 NLRX1Q86UT6 975 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 GLYCTKQ8IVS8 523 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 TMEM161BQ8NDZ6 487 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 NSUN6Q8TEA1 469 aaKnown RBP15.16■□□□□ 0.02
SNCA-204ENST00000394989 BSNDQ8WZ55 320 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 TIPINQ9BVW5 301 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 POLR2AP24928 1970 aaKnown RBP15.16■□□□□ 0.02
SNCA-204ENST00000394989 PFASO15067 1338 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 LOC102724159A0A0B4J2E5 919 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 SPDYE16A6NNV3 312 aaPredicted RBP15.16■□□□□ 0.02
SNCA-204ENST00000394989 SLC7A5Q01650 507 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 PWP2Q15269 919 aaKnown RBP15.16■□□□□ 0.02
SNCA-204ENST00000394989 XXYLT1Q8NBI6 393 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 CWC15Q9P013 229 aaKnown RBP15.16■□□□□ 0.02
SNCA-204ENST00000394989 ATP8B3O60423 1300 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 ZBTB48P10074 688 aaPredicted RBP15.16■□□□□ 0.02
SNCA-204ENST00000394989 NPTX2P47972 431 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 GDAP1L1Q96MZ0 367 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 TEX13BQ9BXU2 312 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 GABBR1Q9UBS5 961 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 TCEAL9Q9UHQ7 104 aa15.16■□□□□ 0.02
SNCA-204ENST00000394989 ANKRD63C9JTQ0 380 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 MAFGO15525 162 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 ADRB2P07550 413 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 MCM3P25205 808 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 GCLMP48507 274 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 PRKG1Q13976 671 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 CFAP221Q4G0U5 840 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 SRLQ86TD4 932 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 PALB2Q86YC2 1186 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 RDM1Q8NG50 284 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 U2AF1L4Q8WU68 220 aaKnown RBP15.15■□□□□ 0.02
SNCA-204ENST00000394989 ZC3H4Q9UPT8 1303 aaKnown RBP15.15■□□□□ 0.02
SNCA-204ENST00000394989 FOXN3O00409 490 aaPredicted RBP15.15■□□□□ 0.02
SNCA-204ENST00000394989 PEX10O60683 326 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 KRT13P13646 458 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 ARHGAP44Q17R89 818 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 EPC2Q52LR7 807 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 ARHGEF19Q8IW93 802 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 TPCN2Q8NHX9 752 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 TBX20Q9UMR3 447 aa15.15■□□□□ 0.02
SNCA-204ENST00000394989 ADGRA3Q8IWK6 1321 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 SORBS3O60504 671 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 PAFAH1B1P43034 410 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 PTPROQ16827 1216 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 VPS36Q86VN1 386 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 CCDC60Q8IWA6 550 aaPredicted RBP15.14■□□□□ 0.01
SNCA-204ENST00000394989 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.14■□□□□ 0.01
SNCA-204ENST00000394989 FAN1Q9Y2M0 1017 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 GOLGA8IPA6NC78 632 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 GOLGA8JA6NMD2 632 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 GALCP54803 685 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 MCCD1P59942 119 aaPredicted RBP15.14■□□□□ 0.01
SNCA-204ENST00000394989 SP2Q02086 613 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 NOL9Q5SY16 702 aaKnown RBP15.14■□□□□ 0.01
SNCA-204ENST00000394989 CBWD2Q8IUF1 395 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 MAP4K3Q8IVH8 894 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 ACAD9Q9H845 621 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 RNF14Q9UBS8 474 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 FAM170AA1A519 330 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 CCDC169A6NNP5 214 aa15.14■□□□□ 0.01
SNCA-204ENST00000394989 H2AFZP0C0S5 128 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms