RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 CAPRIN2Q6IMN6 1127 aaKnown RBP12.07□□□□□ -0.48
CUX1-204ENST00000393824 CATSPERGQ6ZRH7 1159 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 FBXO11Q86XK2 927 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 ANKS4BQ8N8V4 417 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 USP38Q8NB14 1042 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 REPS2Q8NFH8 660 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 CCDC26Q8TAB7 109 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 CHURC1Q8WUH1 139 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 AMNQ9BXJ7 453 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 SLC38A10Q9HBR0 1119 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 HOMER2Q9NSB8 354 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 KCNH4Q9UQ05 1017 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 EME2A4GXA9 379 aaPredicted RBP12.06□□□□□ -0.48
CUX1-204ENST00000393824 SPDYE16A6NNV3 312 aaPredicted RBP12.06□□□□□ -0.48
CUX1-204ENST00000393824 C19orf81C9J6K1 198 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 NFIBO00712 420 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 ASAP2O43150 1006 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 PLA2G6O60733 806 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 ATP2C2O75185 946 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 FGFR1OPO95684 399 aaKnown RBP12.06□□□□□ -0.48
CUX1-204ENST00000393824 ERVK-9P63128 1117 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 AMPD3Q01432 767 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 MEI1Q5TIA1 1274 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 ANKRD40Q6AI12 368 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 FOXR2Q6PJQ5 311 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 GADL1Q6ZQY3 521 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 ANKRD13CQ8N6S4 541 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 OR2W6PQ8NHA6 318 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 SLC10A4Q96EP9 437 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 MS4A4AQ96JQ5 239 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 PSTPIP2Q9H939 334 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 NOP53Q9NZM5 478 aaKnown RBP12.06□□□□□ -0.48
CUX1-204ENST00000393824 NOVA2Q9UNW9 492 aaKnown RBP12.06□□□□□ -0.48
CUX1-204ENST00000393824 PARP14Q460N5 1801 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 EPHB6O15197 1021 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 BUB1O43683 1085 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 CLK2P49760 499 aaKnown RBP12.06□□□□□ -0.48
CUX1-204ENST00000393824 PPIL2Q13356 520 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 MKRN4PQ13434 485 aaPredicted RBP12.06□□□□□ -0.48
CUX1-204ENST00000393824 HLTFQ14527 1009 aaKnown RBP eCLIP12.06□□□□□ -0.48
CUX1-204ENST00000393824 TMEM132BQ14DG7 1078 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 GPAT2Q6NUI2 795 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 PIGWQ7Z7B1 504 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 ZNF513Q8N8E2 541 aaPredicted RBP12.06□□□□□ -0.48
CUX1-204ENST00000393824 MICAL1Q8TDZ2 1067 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 ZNF317Q96PQ6 595 aaPredicted RBP12.06□□□□□ -0.48
CUX1-204ENST00000393824 XPO6Q96QU8 1125 aaKnown RBP12.06□□□□□ -0.48
CUX1-204ENST00000393824 PCDHGC5Q9Y5F6 944 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 PASKQ96RG2 1323 aa12.06□□□□□ -0.48
CUX1-204ENST00000393824 ESYT2A0FGR8 921 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 ADCY7P51828 1080 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 HUNKP57058 714 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 MAGOHP61326 146 aaKnown RBP12.05□□□□□ -0.48
CUX1-204ENST00000393824 TRAF1Q13077 416 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 NAB2Q15742 525 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 CNNM4Q6P4Q7 775 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 FAM160B2Q86V87 743 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 REXO1Q8N1G1 1221 aaKnown RBP12.05□□□□□ -0.48
CUX1-204ENST00000393824 SCFD2Q8WU76 684 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 BAP1Q92560 729 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 MAGOHBQ96A72 148 aaKnown RBP12.05□□□□□ -0.48
CUX1-204ENST00000393824 UIMC1Q96RL1 719 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 MOV10L1Q9BXT6 1211 aaKnown RBP12.05□□□□□ -0.48
CUX1-204ENST00000393824 FAM129AQ9BZQ8 928 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 RIC8AQ9NPQ8 531 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 IRAK4Q9NWZ3 460 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 TMOD4Q9NZQ9 345 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 CPSF2Q9P2I0 782 aaKnown RBP12.05□□□□□ -0.48
CUX1-204ENST00000393824 ZNF214Q9UL59 606 aaPredicted RBP12.05□□□□□ -0.48
CUX1-204ENST00000393824 L3MBTL1Q9Y468 752 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 RPS6KL1Q9Y6S9 549 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 CCDC194A0A1B0GVG4 234 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 LRRC53A6NM62 1247 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 BACH1O14867 736 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 CAND2O75155 1236 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 PALMO75781 387 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 GFPT1Q06210 699 aaPredicted RBP12.05□□□□□ -0.48
CUX1-204ENST00000393824 RBBP5Q15291 538 aaKnown RBP12.05□□□□□ -0.48
CUX1-204ENST00000393824 VWA3BQ502W6 1294 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 HGSNATQ68CP4 663 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 RBM46Q8TBY0 533 aaKnown RBP12.05□□□□□ -0.48
CUX1-204ENST00000393824 AGAP11Q8TF27 550 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 TLCD1Q96CP7 247 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 ZNF570Q96NI8 536 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 C6orf50Q9HD87 102 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 SLC5A4Q9NY91 659 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 COL20A1Q9P218 1284 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 CCPG1Q9ULG6 757 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 ADAMTS5Q9UNA0 930 aa12.05□□□□□ -0.48
CUX1-204ENST00000393824 ICAM1P05362 532 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 CLTAP09496 248 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 CYP2C8P10632 490 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 PECAM1P16284 738 aaPredicted RBP12.04□□□□□ -0.48
CUX1-204ENST00000393824 CCND1P24385 295 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 DSG3P32926 999 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 PDE4DQ08499 809 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 ORC2Q13416 577 aaPredicted RBP12.04□□□□□ -0.48
CUX1-204ENST00000393824 COG2Q14746 738 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 CENPPQ6IPU0 288 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 RRAGAQ7L523 313 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms