RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 BBS2Q9BXC9 721 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 ZNF532Q9HCE3 1301 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 NSD2O96028 1365 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 ATP8B1O43520 1251 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 PEX1O43933 1283 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 RGS2P41220 211 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 RWDD2BP57060 319 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 CTDSPL2Q05D32 466 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 CUL3Q13618 768 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 TRIP4Q15650 581 aaPredicted RBP11.29□□□□□ -0.6
RTN3-206ENST00000377819 ADCK5Q3MIX3 580 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 NAALADL2Q58DX5 795 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 C11orf88Q6PI97 169 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 RNASE11Q8TAA1 199 aaKnown RBP11.29□□□□□ -0.6
RTN3-206ENST00000377819 RSPH1Q8WYR4 309 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.29□□□□□ -0.6
RTN3-206ENST00000377819 TSSK1BQ9BXA7 367 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 FAM49AQ9H0Q0 323 aaPredicted RBP11.29□□□□□ -0.6
RTN3-206ENST00000377819 BICC1Q9H694 974 aaKnown RBP11.29□□□□□ -0.6
RTN3-206ENST00000377819 HAUS5O94927 633 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 SERPINB1P30740 379 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 SP110Q9HB58 689 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 MROH5Q6ZUA9 1318 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 CFAP99D6REC4 459 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 DYRK3O43781 588 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 APBA3O96018 575 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 LDHAP00338 332 aaKnown RBP11.28□□□□□ -0.6
RTN3-206ENST00000377819 CPA1P15085 419 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 GCFC2P16383 781 aaKnown RBP11.28□□□□□ -0.6
RTN3-206ENST00000377819 ATP6V1C1P21283 382 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 PSMA2P25787 234 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 CBFBQ13951 182 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 ZNF235Q14590 738 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 LRRC24Q50LG9 513 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 RGS9BPQ6ZS82 235 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 NBPF15Q8N660 670 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 URGCPQ8TCY9 931 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 SH3TC2Q8TF17 1288 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 C10orf88Q9H8K7 445 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 PNMA3Q9UL41 463 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 SERPINB3P29508 390 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 CASP14P31944 242 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 COPB1P53618 953 aaKnown RBP11.28□□□□□ -0.6
RTN3-206ENST00000377819 AP1S2P56377 157 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 SF3B3Q15393 1217 aaKnown RBP11.28□□□□□ -0.6
RTN3-206ENST00000377819 BTBD8Q5XKL5 378 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 LRRC8EQ6NSJ5 796 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 ERAP2Q6P179 960 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 IFNLR1Q8IU57 520 aaPredicted RBP11.28□□□□□ -0.6
RTN3-206ENST00000377819 RBM41Q96IZ5 413 aaKnown RBP11.28□□□□□ -0.6
RTN3-206ENST00000377819 ELMO2Q96JJ3 720 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 OLFM1Q99784 485 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 CYP26B1Q9NR63 512 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.28□□□□□ -0.6
RTN3-206ENST00000377819 ABCA6Q8N139 1617 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 PCDH11XQ9BZA7 1347 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 PCDH11YQ9BZA8 1340 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 ANGPT2O15123 496 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 TAF5LO75529 589 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 SLC16A1P53985 500 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 PNOCQ13519 176 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 FASTKD1Q53R41 847 aaKnown RBP11.28□□□□□ -0.6
RTN3-206ENST00000377819 SLC25A24Q6NUK1 477 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 C10orf53Q8N6V4 93 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 ZMYND12Q9H0C1 365 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 SYCP2Q9BX26 1530 aa11.28□□□□□ -0.6
RTN3-206ENST00000377819 FAM47E-STBD1D6RA91 191 aa11.27□□□□□ -0.6
RTN3-206ENST00000377819 PIK3R2O00459 728 aa11.27□□□□□ -0.6
RTN3-206ENST00000377819 PODXLO00592 558 aa11.27□□□□□ -0.6
RTN3-206ENST00000377819 ACTR2P61160 394 aa11.27□□□□□ -0.6
RTN3-206ENST00000377819 KLHL38Q2WGJ6 581 aa11.27□□□□□ -0.6
RTN3-206ENST00000377819 TWF2Q6IBS0 349 aaKnown RBP11.27□□□□□ -0.6
RTN3-206ENST00000377819 MRPL48Q96GC5 212 aaKnown RBP11.27□□□□□ -0.6
RTN3-206ENST00000377819 TUFT1Q9NNX1 390 aa11.27□□□□□ -0.6
RTN3-206ENST00000377819 SCN3BQ9NY72 215 aa11.27□□□□□ -0.6
RTN3-206ENST00000377819 ZNF189O75820 626 aaPredicted RBP11.27□□□□□ -0.61
RTN3-206ENST00000377819 PPARAQ07869 468 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 MTERF2Q49AM1 385 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 FANCBQ8NB91 859 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 CNOT6LQ96LI5 555 aaKnown RBP11.27□□□□□ -0.61
RTN3-206ENST00000377819 LATS2Q9NRM7 1088 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 TBC1D23Q9NUY8 699 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 ATP1A1P05023 1023 aaKnown RBP11.27□□□□□ -0.61
RTN3-206ENST00000377819 PTGDRQ13258 359 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 TRIP13Q15645 432 aaPredicted RBP11.27□□□□□ -0.61
RTN3-206ENST00000377819 SYTL3Q4VX76 610 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 SDE2Q6IQ49 451 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 ZBED8Q8IZ13 594 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 TESK2Q96S53 571 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 ASNSD1Q9NWL6 643 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 LCMT1Q9UIC8 334 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 AURKCQ9UQB9 309 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 RRP15Q9Y3B9 282 aaKnown RBP11.27□□□□□ -0.61
RTN3-206ENST00000377819 PSMC3P17980 439 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 HOXD10P28358 340 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 MAN2A1Q16706 1144 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 LRRC47Q8N1G4 583 aaKnown RBP11.27□□□□□ -0.61
RTN3-206ENST00000377819 CLEC4FQ8N1N0 589 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 AFG1LQ8WV93 481 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 ARL8AQ96BM9 186 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms