RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 MTSS1LQ765P7 747 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 PEX26Q7Z412 305 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 PLD3Q8IV08 490 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 AIF1LQ9BQI0 150 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 H2AFJQ9BTM1 129 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 INO80BQ9C086 356 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 ADNPQ9H2P0 1102 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 BICC1Q9H694 974 aaKnown RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 CCDC87Q9NVE4 849 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 PNMA3Q9UL41 463 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 MDFIC2A0A1B0GVS7 189 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 LRRD1A4D1F6 860 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 PPIP5K2O43314 1243 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 ALAS1P13196 640 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 HOXD10P28358 340 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 HIRAP54198 1017 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 AP1B1Q10567 949 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 AP3B2Q13367 1082 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 NFIL3Q16649 462 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 CDO1Q16878 200 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 SLC10A5Q5PT55 438 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 SPATA21Q7Z572 469 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 UBE2Q1Q7Z7E8 422 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 RCOR2Q8IZ40 523 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 RASGEF1AQ8N9B8 481 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 TTLL11Q8NHH1 800 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 CITED4Q96RK1 184 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 TSSK1BQ9BXA7 367 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 LARSQ9P2J5 1176 aaKnown RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 ARL5AQ9Y689 179 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 PIPSLA2A3N6 862 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 TRIM16O95361 564 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 C6P13671 934 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 MAP2K2P36507 400 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 ELOAQ14241 798 aaKnown RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 KCTD6Q8NC69 237 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 ERLEC1Q96DZ1 483 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 C19orf60Q96EN9 201 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 PNKPQ96T60 521 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 SPON2Q9BUD6 331 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 MIS12Q9H081 205 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 SMYD3Q9H7B4 428 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 RIC8BQ9NVN3 520 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 DNM3Q9UQ16 869 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 GPC6Q9Y625 555 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 KLF18A0A0U1RQI7 1052 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 CYBBP04839 570 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 TAC1P20366 129 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 S100A5P33763 92 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 NSFP46459 744 aaKnown RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 MTTPP55157 894 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 CTTNQ14247 550 aaKnown RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 SQLEQ14534 574 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 DDB1Q16531 1140 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 NME9Q86XW9 330 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 MICALL2Q8IY33 904 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 SCAIQ8N9R8 606 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 HIST1H2AHQ96KK5 128 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 HIST1H2AJQ99878 128 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 UNKQ9C0B0 810 aaKnown RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 NSMCE4AQ9NXX6 385 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 A0A087WUV0 522 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 EIF3DO15371 548 aaKnown RBP eCLIP4.92□□□□□ -1.623e-6■■□□□ 11.9
SCN1A-202ENST00000375405 BUB1O43683 1085 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 CAND2O75155 1236 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 SEC24DO94855 1032 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 UFL1O94874 794 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 PRIM2P49643 509 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 CCNA1P78396 465 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 RAD51Q06609 339 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 TWF1Q12792 350 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 VEPH1Q14D04 833 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 ANO5Q75V66 913 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 GLYCTKQ8IVS8 523 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 COG1Q8WTW3 980 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 BRF1Q92994 677 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 XPO6Q96QU8 1125 aaKnown RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 TBCDQ9BTW9 1192 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 EPC1Q9H2F5 836 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 EXOSC4Q9NPD3 245 aaKnown RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 C1orf112Q9NSG2 853 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 H3BUI4 141 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 COBLO75128 1261 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 SOX11P35716 441 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 TXKP42681 527 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 BDH1Q02338 343 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 KRT71Q3SY84 523 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 AP1ARQ63HQ0 302 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 NEK8Q86SG6 692 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 SLC44A2Q8IWA5 706 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 DDIASQ8IXT1 998 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 TESCQ96BS2 214 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 YY1AP1Q9H869 796 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 PARVAQ9NVD7 372 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 MORC2Q9Y6X9 1032 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 SPACA6W5XKT8 324 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 PTPRCP08575 1304 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 PLEKHA8P1O95397 391 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 GSTM1P09488 218 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms