RNA–Protein interactions for RNA: ENST00000375315.6

C9orf3-203, Transcript of chromosome 9 open reading frame 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf3, Length 3,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-203ENST00000375315 ANKS1AQ92625 1134 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 INPP4AQ96PE3 977 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-203ENST00000375315 RAB3IPQ96QF0 476 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-203ENST00000375315 ZCWPW1Q9H0M4 648 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 INTS9Q9NV88 658 aaKnown RBP13.12□□□□□ -0.31
C9orf3-203ENST00000375315 BARHL2Q9NY43 387 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 SALL4Q9UJQ4 1053 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 PCDHA4Q9UN74 947 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 CNTNAP1P78357 1384 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 MAST2Q6P0Q8 1798 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 PPP1R11O60927 126 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-203ENST00000375315 YBX3P16989 372 aaKnown RBP eCLIP13.12□□□□□ -0.313e-7■■□□□ 11.8
C9orf3-203ENST00000375315 HOXA13P31271 388 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-203ENST00000375315 PDE6CP51160 858 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 MAEAQ7L5Y9 396 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 MAIP1Q8WWC4 291 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 PBKQ96KB5 322 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 TRAPPC9Q96Q05 1148 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 SYT15Q9BQS2 421 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 NOC4LQ9BVI4 516 aaKnown RBP13.12□□□□□ -0.31
C9orf3-203ENST00000375315 MRIQ9BWK5 157 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 ZNF341Q9BYN7 854 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 HOMER2Q9NSB8 354 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 PCDHA6Q9UN73 950 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 PCDHA8Q9Y5H6 950 aa13.12□□□□□ -0.31
C9orf3-203ENST00000375315 ECM29Q5VYK3 1845 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 MARCH6O60337 910 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 BNIP1Q12981 228 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 QRICH1Q2TAL8 776 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 GALNTL6Q49A17 601 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 ANKRD23Q86SG2 305 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 TRIM7Q9C029 511 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 ZBTB21Q9ULJ3 1066 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 PCDHA1Q9Y5I3 950 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 A0A1B0GVG6 124 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 F8VZ95 297 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 PALMO75781 387 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 SUN1O94901 812 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 PMS1P54277 932 aaKnown RBP13.11□□□□□ -0.31
C9orf3-203ENST00000375315 ATXN2LQ8WWM7 1075 aaKnown RBP13.11□□□□□ -0.31
C9orf3-203ENST00000375315 KIFAP3Q92845 792 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 FGD4Q96M96 766 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 C6orf50Q9HD87 102 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.11□□□□□ -0.31
C9orf3-203ENST00000375315 IGKV6D-41A0A0C4DH26 115 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 FTCDO95954 541 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 SP100P23497 879 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-203ENST00000375315 TUBP50607 506 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 TATDN1Q6P1N9 297 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 TMC3Q7Z5M5 1100 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 DDX42Q86XP3 938 aaKnown RBP eCLIP13.11□□□□□ -0.31
C9orf3-203ENST00000375315 TBCKQ8TEA7 893 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 TMEM60Q9H2L4 133 aa13.11□□□□□ -0.31
C9orf3-203ENST00000375315 USP15Q9Y4E8 981 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-203ENST00000375315 SNX3O60493 162 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 CALML3P27482 149 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 TPP2P29144 1249 aaPredicted RBP13.1□□□□□ -0.31
C9orf3-203ENST00000375315 DHX9Q08211 1270 aaKnown RBP13.1□□□□□ -0.31
C9orf3-203ENST00000375315 ASPRV1Q53RT3 343 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 EAPPQ56P03 285 aaPredicted RBP13.1□□□□□ -0.31
C9orf3-203ENST00000375315 CNOT6LQ96LI5 555 aaKnown RBP13.1□□□□□ -0.31
C9orf3-203ENST00000375315 MTRQ99707 1265 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 MMTAG2Q9BU76 263 aaKnown RBP13.1□□□□□ -0.31
C9orf3-203ENST00000375315 CCDC134Q9H6E4 229 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 DLGAP2Q9P1A6 1054 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 CTNNAL1Q9UBT7 734 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 PCDHGA4Q9Y5G9 962 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 CDK5RAP2Q96SN8 1893 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 BMP3P12645 472 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 RAD23BP54727 409 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 LMNB2Q03252 620 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 SLC30A10Q6XR72 485 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 REXO1Q8N1G1 1221 aaKnown RBP13.1□□□□□ -0.31
C9orf3-203ENST00000375315 RPS6KC1Q96S38 1066 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 RNPEPL1Q9HAU8 725 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 PCMTD2Q9NV79 361 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 TMEM59LQ9UK28 342 aa13.1□□□□□ -0.31
C9orf3-203ENST00000375315 MYH6P13533 1939 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 BICDL2A1A5D9 508 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 GSTA2P09210 222 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 ACADSP16219 412 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 GNAZP19086 355 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 CALB2P22676 271 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 ABCD1P33897 745 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 MMP13P45452 471 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 EHHADHQ08426 723 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 DBN1Q16643 649 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 C9orf131Q5VYM1 1079 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 TTI2Q6NXR4 508 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 TRMT1LQ7Z2T5 733 aaKnown RBP13.09□□□□□ -0.31
C9orf3-203ENST00000375315 SPZ1Q9BXG8 430 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 RGPD3A6NKT7 1758 aaPredicted RBP13.09□□□□□ -0.31
C9orf3-203ENST00000375315 RGPD4Q7Z3J3 1758 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 FAM163BP0C2L3 166 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 LMNB1P20700 586 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 TXKP42681 527 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 SPDYCQ5MJ68 293 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 ACBD5Q5T8D3 534 aaPredicted RBP13.09□□□□□ -0.31
C9orf3-203ENST00000375315 MEI1Q5TIA1 1274 aa13.09□□□□□ -0.31
C9orf3-203ENST00000375315 DHTKD1Q96HY7 919 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms