RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ELF1P32519 619 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 NF2P35240 595 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 SREBF1P36956 1147 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 ELF3P78545 371 aaPredicted RBP17.7■□□□□ 0.42
SDC4-201ENST00000372733 MYL7Q01449 175 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 PPP1R7Q15435 360 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 PPP2R5EQ16537 467 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 HIBCHQ6NVY1 386 aaPredicted RBP17.7■□□□□ 0.42
SDC4-201ENST00000372733 ZFPM1Q8IX07 1006 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 PRMT1Q99873 361 aaKnown RBP17.7■□□□□ 0.42
SDC4-201ENST00000372733 INTS9Q9NV88 658 aaKnown RBP17.7■□□□□ 0.42
SDC4-201ENST00000372733 APEX2Q9UBZ4 518 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 ALG6Q9Y672 507 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 ANKRD62A6NC57 917 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 CHMP2AO43633 222 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 GAP43P17677 238 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 CCDC38Q502W7 563 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 CCDC50Q8IVM0 306 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 FAM20AQ96MK3 541 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 ELAC2Q9BQ52 826 aaKnown RBP17.69■□□□□ 0.42
SDC4-201ENST00000372733 EIF3DO15371 548 aaKnown RBP eCLIP17.69■□□□□ 0.42
SDC4-201ENST00000372733 MGRN1O60291 552 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 HLA-DOAP06340 250 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 CRY2Q49AN0 593 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 CDC42EP5Q6NZY7 148 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 ANKS4BQ8N8V4 417 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 CCDC113Q9H0I3 377 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 CTTNBP2NLQ9P2B4 639 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 SYNGAP1Q96PV0 1343 aa17.69■□□□□ 0.42
SDC4-201ENST00000372733 ANKRD63C9JTQ0 380 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 FOXN3O00409 490 aaPredicted RBP17.68■□□□□ 0.42
SDC4-201ENST00000372733 C21orf2O43822 256 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 VIMP08670 466 aaKnown RBP17.68■□□□□ 0.42
SDC4-201ENST00000372733 TRAPPC3LQ5T215 181 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 PHLDB3Q6NSJ2 640 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 ZNF746Q6NUN9 644 aaPredicted RBP17.68■□□□□ 0.42
SDC4-201ENST00000372733 PIGWQ7Z7B1 504 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 POLR3CQ9BUI4 534 aaPredicted RBP17.68■□□□□ 0.42
SDC4-201ENST00000372733 TRPC6Q9Y210 931 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 BTAF1O14981 1849 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 ASAP2O43150 1006 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 FAM133BQ5BKY9 247 aaKnown RBP17.68■□□□□ 0.42
SDC4-201ENST00000372733 TPH2Q8IWU9 490 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 RDH13Q8NBN7 331 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 AMNQ9BXJ7 453 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 AGPAT3Q9NRZ7 376 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 SLC12A4Q9UP95 1085 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 TCRBV7S2A1N4TA0A589 114 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 ATP6V1G2O95670 118 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 CACNB3P54284 484 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 IKQ13123 557 aaPredicted RBP17.68■□□□□ 0.42
SDC4-201ENST00000372733 CPNE8Q86YQ8 564 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 DCAF4Q8WV16 495 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 AGPAT1Q99943 283 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 ABCF3Q9NUQ8 709 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.68■□□□□ 0.42
SDC4-201ENST00000372733 SAMD15Q9P1V8 674 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 BAIAP2L1Q9UHR4 511 aa17.68■□□□□ 0.42
SDC4-201ENST00000372733 AGTP01019 485 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 EZRP15311 586 aaKnown RBP17.67■□□□□ 0.42
SDC4-201ENST00000372733 CHRNA3P32297 505 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 ZNF76P36508 570 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 DRG2P55039 364 aaKnown RBP17.67■□□□□ 0.42
SDC4-201ENST00000372733 ADCY2Q08462 1091 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 MKRN4PQ13434 485 aaPredicted RBP17.67■□□□□ 0.42
SDC4-201ENST00000372733 ITIH4Q14624 930 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 KIF22Q14807 665 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 FAM196AQ6ZSG2 479 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 C1orf186Q6ZWK4 172 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 HS2ST1Q7LGA3 356 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 RPAINQ86UA6 219 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 TAX1BP1Q86VP1 789 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 BANK1Q8NDB2 785 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 TBC1D31Q96DN5 1066 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 RBM17Q96I25 401 aaKnown RBP17.67■□□□□ 0.42
SDC4-201ENST00000372733 DYDC2Q96IM9 177 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 FIZ1Q96SL8 496 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 ZSWIM1Q9BR11 485 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 TACO1Q9BSH4 297 aaKnown RBP17.67■□□□□ 0.42
SDC4-201ENST00000372733 MKNK1Q9BUB5 465 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 PARVGQ9HBI0 331 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 FRMD4BQ9Y2L6 1034 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 PTPN22Q9Y2R2 807 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 CD2APQ9Y5K6 639 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 ATMINO43313 823 aaPredicted RBP17.67■□□□□ 0.42
SDC4-201ENST00000372733 CCDC137Q6PK04 289 aaKnown RBP17.67■□□□□ 0.42
SDC4-201ENST00000372733 CCDC25Q86WR0 208 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 FBXO11Q86XK2 927 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 COL23A1Q86Y22 540 aaPredicted RBP17.67■□□□□ 0.42
SDC4-201ENST00000372733 CCDC63Q8NA47 563 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 MAGEC3Q8TD91 643 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 TCP11Q8WWU5 503 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 NOD2Q9HC29 1040 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 MTRF1LQ9UGC7 380 aaKnown RBP17.67■□□□□ 0.42
SDC4-201ENST00000372733 DBR1Q9UK59 544 aaKnown RBP17.67■□□□□ 0.42
SDC4-201ENST00000372733 PCDHA3Q9Y5H8 950 aa17.67■□□□□ 0.42
SDC4-201ENST00000372733 RIPK2O43353 540 aa17.66■□□□□ 0.42
SDC4-201ENST00000372733 FTLP02792 175 aaPredicted RBP17.66■□□□□ 0.42
SDC4-201ENST00000372733 C6orf118Q5T5N4 469 aa17.66■□□□□ 0.42
SDC4-201ENST00000372733 C11orf63Q6NUN7 778 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms