RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 RFPL2O75678 378 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 SSBP05455 408 aaKnown RBP eCLIP9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 GALTP07902 379 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 CLCN3P51790 818 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 PTGDRQ13258 359 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 HTR4Q13639 388 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 LONRF3Q496Y0 759 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 PPM1JQ5JR12 505 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 DCLRE1AQ6PJP8 1040 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 TSSK4Q6SA08 328 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 ABHD15Q6UXT9 468 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 ABI1Q8IZP0 508 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 LINC01465Q8N7H1 131 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 ZBTB44Q8NCP5 570 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 NELL1Q92832 810 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 LPPQ93052 612 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 TATDN2Q93075 761 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 ZNF707Q96C28 371 aaPredicted RBP9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 TMEM169Q96HH4 297 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 CDHR1Q96JP9 859 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 RTKNQ9BST9 563 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 MYL10Q9BUA6 226 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 NRDE2Q9H7Z3 1164 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 WDR6Q9NNW5 1121 aaKnown RBP9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 ASPMQ8IZT6 3477 aa9.69□□□□□ -0.86
HMGB1P39-201ENST00000366304 CLUHO75153 1309 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 A0A0U1RQF3 1178 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 hCG_1642624A0A1W2PR95 340 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 HOXA2O43364 376 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 GBP2P32456 591 aaPredicted RBP9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 SLC11A1P49279 550 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 ALDH7A1P49419 539 aaKnown RBP9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 NT5C2P49902 561 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 AFF1P51825 1210 aaKnown RBP9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 POLGP54098 1239 aaPredicted RBP9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 STARD6P59095 220 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 GPC5P78333 572 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 LMNB2Q03252 620 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 CSTF1Q05048 431 aaKnown RBP9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 ANKRD45Q5TZF3 282 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 SMYD5Q6GMV2 418 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 CWC27Q6UX04 472 aaKnown RBP9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 C15orf39Q6ZRI6 1047 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 NUDT18Q6ZVK8 323 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 TAS1R1Q7RTX1 841 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 ZNF280BQ86YH2 543 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 CMTR1Q8N1G2 835 aaKnown RBP9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 CMASQ8NFW8 434 aaPredicted RBP9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 CHAMP1Q96JM3 812 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 PGBD1Q96JS3 809 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 MXRA8Q9BRK3 442 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 DDX23Q9BUQ8 820 aaKnown RBP9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 KRT23Q9C075 422 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 EPC1Q9H2F5 836 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 AGO4Q9HCK5 861 aaKnown RBP9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 MAN1C1Q9NR34 630 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 SLC2A4RGQ9NR83 387 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 RCAN3Q9UKA8 241 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 PCDHA6Q9UN73 950 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 PCDHA8Q9Y5H6 950 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 IGF2RP11717 2491 aa9.68□□□□□ -0.86
HMGB1P39-201ENST00000366304 NFASCO94856 1347 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 CCDC195A0A1B0GUA6 201 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 SHISA7A6NL88 538 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 PRR5-ARHGAP8B1AHC4 643 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 DDX39AO00148 427 aaKnown RBP9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 SPTLC1O15269 473 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 DHX15O43143 795 aaKnown RBP9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 HBP1O60381 514 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 PLEKHA8P1O95397 391 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 SPATA31D3P0C874 917 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 LAMP2P13473 410 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 CD72P21854 359 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 SDHBP21912 280 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 RFX1P22670 979 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 KLRC2P26717 231 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 ANTXR2P58335 489 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 NLRP11P59045 1033 aaKnown RBP9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 ARHGAP8P85298 464 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 TRAF1Q13077 416 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 SNW1Q13573 536 aaKnown RBP9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 ZNF528Q3MIS6 628 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 ZNF484Q5JVG2 852 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 FAM43BQ6ZT52 329 aaPredicted RBP9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 SPATA31D4Q6ZUB0 917 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 TRMT1LQ7Z2T5 733 aaKnown RBP9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 CUL5Q93034 780 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 RILPL2Q969X0 211 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 DSCC1Q9BVC3 393 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 SPZ1Q9BXG8 430 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 PSTPIP2Q9H939 334 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 TBC1D13Q9NVG8 400 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 SPATA6Q9NWH7 488 aaPredicted RBP9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 FBXO4Q9UKT5 387 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 USP18Q9UMW8 372 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 NUMBLQ9Y6R0 609 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 DOCK8Q8NF50 2099 aa9.67□□□□□ -0.86
HMGB1P39-201ENST00000366304 COL1A2P08123 1366 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 MAFGO15525 162 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms