RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 PRDM5Q9NQX1 630 aaPredicted RBP15.97■□□□□ 0.15
COL17A1-201ENST00000353479 PLS3P13797 630 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 ACOT2P49753 483 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 GOLGA8KD6RF30 607 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 CPP00450 1065 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 ADORA2BP29275 332 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 GKAP1Q5VSY0 366 aaPredicted RBP15.97■□□□□ 0.15
COL17A1-201ENST00000353479 SCFD2Q8WU76 684 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 SKA2Q8WVK7 121 aaPredicted RBP15.97■□□□□ 0.15
COL17A1-201ENST00000353479 AKT1S1Q96B36 256 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 NUDT12Q9BQG2 462 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 A8MXQ7 604 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 INHBAP08476 426 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 GARSP41250 739 aaKnown RBP15.97■□□□□ 0.15
COL17A1-201ENST00000353479 KATNAL1Q9BW62 490 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 ATP8A1Q9Y2Q0 1164 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 MYBP10242 640 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 PDE1BQ01064 536 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 SREBF2Q12772 1141 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 CCDC62Q6P9F0 684 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 ERO1BQ86YB8 467 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 C3P01024 1663 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 SALL1Q9NSC2 1324 aa15.97■□□□□ 0.15
COL17A1-201ENST00000353479 RGL2O15211 777 aa15.96■□□□□ 0.15
COL17A1-201ENST00000353479 FGGP02679 453 aa15.96■□□□□ 0.15
COL17A1-201ENST00000353479 CALB1P05937 261 aa15.96■□□□□ 0.15
COL17A1-201ENST00000353479 SSTR3P32745 418 aaPredicted RBP15.96■□□□□ 0.15
COL17A1-201ENST00000353479 PLCB4Q15147 1175 aa15.96■□□□□ 0.15
COL17A1-201ENST00000353479 KCNQ5Q9NR82 932 aa15.96■□□□□ 0.15
COL17A1-201ENST00000353479 MAFGO15525 162 aa15.96■□□□□ 0.15
COL17A1-201ENST00000353479 SDCCAG8Q86SQ7 713 aaPredicted RBP15.96■□□□□ 0.15
COL17A1-201ENST00000353479 STK4Q13043 487 aa15.96■□□□□ 0.15
COL17A1-201ENST00000353479 FNDC3AQ9Y2H6 1198 aaKnown RBP15.96■□□□□ 0.15
COL17A1-201ENST00000353479 ZBED1O96006 694 aa15.96■□□□□ 0.15
COL17A1-201ENST00000353479 TEX2Q8IWB9 1127 aa15.96■□□□□ 0.15
COL17A1-201ENST00000353479 PPP4R1Q8TF05 950 aa15.96■□□□□ 0.15
COL17A1-201ENST00000353479 KBTBD13C9JR72 458 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 SLC37A4O43826 429 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 ZC2HC1CQ53FD0 456 aaPredicted RBP15.95■□□□□ 0.14
COL17A1-201ENST00000353479 ANKRD20A3Q5VUR7 823 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 ADSSL1Q8N142 457 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 LRRC71Q8N4P6 559 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 BNIP3LO60238 219 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 RNF40O75150 1001 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 AP3M2P53677 418 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 DR1Q01658 176 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 STMN2Q93045 179 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 STRIP2Q9ULQ0 834 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 PPFIA4O75335 1185 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 RHOBTB3O94955 611 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 RPA1P27694 616 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 FXR2P51116 673 aaKnown RBP eCLIP15.95■□□□□ 0.14
COL17A1-201ENST00000353479 FMR1Q06787 632 aaKnown RBP eCLIP15.95■□□□□ 0.14
COL17A1-201ENST00000353479 TMX2Q9Y320 296 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 MSH4O15457 936 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 GRIN1Q05586 938 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 KYAT1Q16773 422 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 CCDC144BQ3MJ40 725 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 XRRA1Q6P2D8 792 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 ELMSAN1Q6PJG2 1045 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 DAGLBQ8NCG7 672 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 KCND2Q9NZV8 630 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 GNGT1P63211 74 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 SLC7A5Q01650 507 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 KCTD16Q68DU8 428 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 HEMGNQ9BXL5 484 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 ASNSD1Q9NWL6 643 aa15.95■□□□□ 0.14
COL17A1-201ENST00000353479 FAM205AQ6ZU69 1335 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 FTLP02792 175 aaPredicted RBP15.94■□□□□ 0.14
COL17A1-201ENST00000353479 TROVE2P10155 538 aaKnown RBP eCLIP15.94■□□□□ 0.14
COL17A1-201ENST00000353479 EPHB4P54760 987 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 NPEPPSP55786 919 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 PSMC1P62191 440 aaKnown RBP15.94■□□□□ 0.14
COL17A1-201ENST00000353479 NUP85Q9BW27 656 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 SMYD2Q9NRG4 433 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 MAGEB2O15479 319 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 SEC31AO94979 1220 aaKnown RBP15.94■□□□□ 0.14
COL17A1-201ENST00000353479 VCAM1P19320 739 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 RFC5P40937 340 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 CATSPER3Q86XQ3 398 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 ZNF560Q96MR9 790 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 SALL3Q9BXA9 1300 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 SEC23AQ15436 765 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 RAPH1Q70E73 1250 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 GLYCTKQ8IVS8 523 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 ERAP1Q9NZ08 941 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 SLC16A3O15427 465 aaKnown RBP15.94■□□□□ 0.14
COL17A1-201ENST00000353479 RARBP10826 455 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 WDR72Q3MJ13 1102 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 ZNF564Q8TBZ8 553 aaPredicted RBP15.94■□□□□ 0.14
COL17A1-201ENST00000353479 KCNB2Q92953 911 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 MCUR1Q96AQ8 359 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 UNC45AQ9H3U1 944 aa15.94■□□□□ 0.14
COL17A1-201ENST00000353479 MMP14P50281 582 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 EFCAB12Q6NXP0 572 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 ENOSF1Q7L5Y1 443 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 GMCL1P1Q8NEA9 526 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 GPRASP2Q96D09 838 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 GBA2Q9HCG7 927 aaPredicted RBP15.93■□□□□ 0.14
COL17A1-201ENST00000353479 SLC26A4O43511 780 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms