RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 AKAP10O43572 662 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 IL12RB1P42701 662 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ZCWPW2Q504Y3 356 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 PARP10Q53GL7 1025 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 SFR1Q86XK3 245 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ULK4Q96C45 1275 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 MTERF3Q96E29 417 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ZFP42Q96MM3 310 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 CDCA7Q9BWT1 371 aaPredicted RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 TMEM206Q9H813 350 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 CD209Q9NNX6 404 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 FBXL5Q9UKA1 691 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 MAST1Q9Y2H9 1570 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 PALMO75781 387 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ADRA2BP18089 450 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 POLGP54098 1239 aaPredicted RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 GYS2P54840 703 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 URB2Q14146 1524 aaKnown RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 SLC39A14Q15043 492 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ZNF827Q17R98 1081 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 FAM180AQ6UWF9 173 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 CCNYL1Q8N7R7 359 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ZNF713Q8N859 430 aaPredicted RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 USP33Q8TEY7 942 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ZFRQ96KR1 1074 aaKnown RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 PSD3Q9NYI0 1048 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 WDR7Q9Y4E6 1490 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 PRAMEP78395 509 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 KRT76Q01546 638 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 SYDE1Q6ZW31 735 aaPredicted RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 C19orf18Q8NEA5 215 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 NARS2Q96I59 477 aaKnown RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ZC3H12CQ9C0D7 883 aaKnown RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 SLC5A4Q9NY91 659 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 AGTP01019 485 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 PLOD1Q02809 727 aaPredicted RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 KDSRQ06136 332 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 TOGARAM2Q6ZUX3 1019 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 RDH13Q8NBN7 331 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 JARID2Q92833 1246 aaPredicted RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 INPP5DQ92835 1189 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 OTULINQ96BN8 352 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 FAM227BQ96M60 508 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 APOL4Q9BPW4 351 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 EYA2O00167 538 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 PPP1R37O75864 691 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ENO1P06733 434 aaKnown RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 TRIP10Q15642 601 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ARHGEF16Q5VV41 709 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 FAM160B1Q5W0V3 765 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ZNF219Q9P2Y4 722 aaPredicted RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ATP10DQ9P241 1426 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 KPNA4O00629 521 aaPredicted RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 LBRQ14739 615 aaKnown RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 SURF1Q15526 300 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 BBS7Q8IWZ6 715 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 SCFD1Q8WVM8 642 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 VPS50Q96JG6 964 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 DEPDC7Q96QD5 511 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 TSSK1BQ9BXA7 367 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 EIF4E1BA6NMX2 242 aaKnown RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 TALDO1P37837 337 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 DHX34Q14147 1143 aaKnown RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 XKR9Q5GH70 373 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 TPTE2Q6XPS3 522 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 SH3BP5LQ7L8J4 393 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 TRABDQ9H4I3 376 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 UBA2Q9UBT2 640 aaPredicted RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 MAPKBP1O60336 1514 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ABCC2Q92887 1545 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 A2MP01023 1474 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 POTEFA5A3E0 1075 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 GNAT1P11488 350 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 NCF4Q15080 339 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 SPRTNQ9H040 489 aaPredicted RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 BTBD7Q9P203 1132 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 SLC8A2Q9UPR5 921 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 CACNA1CQ13936 2221 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 SAC3D1A6NKF1 404 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 XPO1O14980 1071 aaKnown RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 RECQLP46063 649 aaPredicted RBP6.54□□□□□ -1.36
CSMD1-201ENST00000335551 MXI1P50539 228 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 KRT17Q04695 432 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 FAM45BPQ6NSW5 357 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 SPATA5Q8NB90 893 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ACCSQ96QU6 501 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ZSWIM6Q9HCJ5 1215 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 TRIM39Q9HCM9 518 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 CDYLQ9Y232 598 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 PRR23AA6NEV1 266 aa6.53□□□□□ -1.36
CSMD1-201ENST00000335551 CCT8L1PA6NM43 557 aa6.53□□□□□ -1.36
CSMD1-201ENST00000335551 SNPHO15079 494 aa6.53□□□□□ -1.36
CSMD1-201ENST00000335551 COPB2P35606 906 aa6.53□□□□□ -1.36
CSMD1-201ENST00000335551 PPARAQ07869 468 aa6.53□□□□□ -1.36
CSMD1-201ENST00000335551 ELMSAN1Q6PJG2 1045 aa6.53□□□□□ -1.36
CSMD1-201ENST00000335551 TBC1D22AQ8WUA7 517 aa6.53□□□□□ -1.36
CSMD1-201ENST00000335551 XAGE2Q96GT9 111 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms