RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 NRIP1P48552 1158 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 ERVFC1P60507 584 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 COASYQ13057 564 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 MXD4Q14582 209 aaPredicted RBP19.8■□□□□ 0.76
HDDC3-201ENST00000330334 EMC2Q15006 297 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 C8orf34Q49A92 452 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 FERMT3Q86UX7 667 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 ADHFE1Q8IWW8 467 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 RNF169Q8NCN4 708 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 C8orf76Q96K31 380 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 EPHX3Q9H6B9 360 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 NGRNQ9NPE2 291 aaKnown RBP19.8■□□□□ 0.76
HDDC3-201ENST00000330334 FAM105AQ9NUU6 356 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 CLEC1BQ9P126 229 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 CD207Q9UJ71 328 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 ATG2AQ2TAZ0 1938 aa19.8■□□□□ 0.76
HDDC3-201ENST00000330334 DGAT1O75907 488 aa19.79■□□□□ 0.76
HDDC3-201ENST00000330334 SRGAP2CP0DJJ0 459 aa19.79■□□□□ 0.76
HDDC3-201ENST00000330334 NDUFV1P49821 464 aa19.79■□□□□ 0.76
HDDC3-201ENST00000330334 ZP2Q05996 745 aa19.79■□□□□ 0.76
HDDC3-201ENST00000330334 CCDC83Q8IWF9 413 aa19.79■□□□□ 0.76
HDDC3-201ENST00000330334 FBXO18Q8NFZ0 1043 aa19.79■□□□□ 0.76
HDDC3-201ENST00000330334 HELQQ8TDG4 1101 aa19.79■□□□□ 0.76
HDDC3-201ENST00000330334 MTRQ99707 1265 aa19.79■□□□□ 0.76
HDDC3-201ENST00000330334 CSPG5O95196 566 aa19.78■□□□□ 0.76
HDDC3-201ENST00000330334 HOXA11P31270 313 aaPredicted RBP19.78■□□□□ 0.76
HDDC3-201ENST00000330334 ALDH7A1P49419 539 aaKnown RBP19.78■□□□□ 0.76
HDDC3-201ENST00000330334 RBM25P49756 843 aaKnown RBP19.78■□□□□ 0.76
HDDC3-201ENST00000330334 DUSP6Q16828 381 aa19.78■□□□□ 0.76
HDDC3-201ENST00000330334 GLB1LQ6UWU2 654 aa19.78■□□□□ 0.76
HDDC3-201ENST00000330334 TMEM184AQ6ZMB5 413 aa19.78■□□□□ 0.76
HDDC3-201ENST00000330334 MRPL10Q7Z7H8 261 aaKnown RBP19.78■□□□□ 0.76
HDDC3-201ENST00000330334 IFNLR1Q8IU57 520 aaPredicted RBP19.78■□□□□ 0.76
HDDC3-201ENST00000330334 SLC39A11Q8N1S5 342 aa19.78■□□□□ 0.76
HDDC3-201ENST00000330334 RNF149Q8NC42 400 aa19.78■□□□□ 0.76
HDDC3-201ENST00000330334 SMRP1Q8NCR6 262 aa19.78■□□□□ 0.76
HDDC3-201ENST00000330334 KHSRPQ92945 711 aaKnown RBP eCLIP19.78■□□□□ 0.76
HDDC3-201ENST00000330334 PGBD4Q96DM1 585 aa19.78■□□□□ 0.76
HDDC3-201ENST00000330334 XPNPEP1Q9NQW7 623 aa19.78■□□□□ 0.76
HDDC3-201ENST00000330334 GPR37L1O60883 481 aa19.77■□□□□ 0.76
HDDC3-201ENST00000330334 GLP2RO95838 553 aa19.77■□□□□ 0.76
HDDC3-201ENST00000330334 SSTR3P32745 418 aaPredicted RBP19.77■□□□□ 0.76
HDDC3-201ENST00000330334 RARRES1P49788 294 aa19.77■□□□□ 0.76
HDDC3-201ENST00000330334 PTENP60484 403 aa19.77■□□□□ 0.76
HDDC3-201ENST00000330334 RBM23Q86U06 439 aaKnown RBP19.77■□□□□ 0.76
HDDC3-201ENST00000330334 POP1Q99575 1024 aaKnown RBP19.77■□□□□ 0.76
HDDC3-201ENST00000330334 NFKBIZQ9BYH8 718 aa19.77■□□□□ 0.76
HDDC3-201ENST00000330334 TMEM60Q9H2L4 133 aa19.77■□□□□ 0.76
HDDC3-201ENST00000330334 MINDY3Q9H8M7 445 aa19.77■□□□□ 0.76
HDDC3-201ENST00000330334 PCDHB2Q9Y5E7 798 aa19.77■□□□□ 0.76
HDDC3-201ENST00000330334 PCDHGC5Q9Y5F6 944 aa19.77■□□□□ 0.76
HDDC3-201ENST00000330334 C5orf42Q9H799 3197 aa19.77■□□□□ 0.75
HDDC3-201ENST00000330334 PLXNA4Q9HCM2 1894 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 OFD1O75665 1012 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 SPATA31C1P0DKV0 1188 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 ALADP13716 330 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 COL9A1P20849 921 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 AXLP30530 894 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 MCM7P33993 719 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 ARL2P36404 184 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 TRAPPC10P48553 1259 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 FOSBP53539 338 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 BCAR1P56945 870 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 GUCY1B3Q02153 619 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 KCNC3Q14003 757 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 TFDP1Q14186 410 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 NOMO2Q5JPE7 1267 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 TCF25Q9BQ70 676 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 TUFT1Q9NNX1 390 aa19.76■□□□□ 0.75
HDDC3-201ENST00000330334 PER2O15055 1255 aa19.75■□□□□ 0.75
HDDC3-201ENST00000330334 NCBP1Q09161 790 aaKnown RBP19.75■□□□□ 0.75
HDDC3-201ENST00000330334 CLUL1Q15846 466 aa19.75■□□□□ 0.75
HDDC3-201ENST00000330334 TMEM31Q5JXX7 168 aa19.75■□□□□ 0.75
HDDC3-201ENST00000330334 MRPL43Q8N983 215 aaKnown RBP19.75■□□□□ 0.75
HDDC3-201ENST00000330334 CNNM3Q8NE01 707 aa19.75■□□□□ 0.75
HDDC3-201ENST00000330334 LPPQ93052 612 aa19.75■□□□□ 0.75
HDDC3-201ENST00000330334 CCDC51Q96ER9 411 aa19.75■□□□□ 0.75
HDDC3-201ENST00000330334 POLR3CQ9BUI4 534 aaPredicted RBP19.75■□□□□ 0.75
HDDC3-201ENST00000330334 TBC1D13Q9NVG8 400 aa19.75■□□□□ 0.75
HDDC3-201ENST00000330334 KANSL3Q9P2N6 904 aa19.75■□□□□ 0.75
HDDC3-201ENST00000330334 CNTNAP2Q9UHC6 1331 aa19.75■□□□□ 0.75
HDDC3-201ENST00000330334 POTEMA6NI47 508 aa19.74■□□□□ 0.75
HDDC3-201ENST00000330334 PBX3P40426 434 aa19.74■□□□□ 0.75
HDDC3-201ENST00000330334 BMS1Q14692 1282 aaKnown RBP19.74■□□□□ 0.75
HDDC3-201ENST00000330334 UBXN11Q5T124 520 aa19.74■□□□□ 0.75
HDDC3-201ENST00000330334 AGMOQ6ZNB7 445 aa19.74■□□□□ 0.75
HDDC3-201ENST00000330334 TMC7Q7Z402 723 aa19.74■□□□□ 0.75
HDDC3-201ENST00000330334 CATSPER3Q86XQ3 398 aa19.74■□□□□ 0.75
HDDC3-201ENST00000330334 NOSTRINQ8IVI9 506 aa19.74■□□□□ 0.75
HDDC3-201ENST00000330334 FAM184AQ8NB25 1140 aa19.74■□□□□ 0.75
HDDC3-201ENST00000330334 NACC1Q96RE7 527 aa19.74■□□□□ 0.75
HDDC3-201ENST00000330334 UBN1Q9NPG3 1134 aa19.74■□□□□ 0.75
HDDC3-201ENST00000330334 ENTPD7Q9NQZ7 604 aa19.74■□□□□ 0.75
HDDC3-201ENST00000330334 BMP2KQ9NSY1 1161 aaPredicted RBP19.74■□□□□ 0.75
HDDC3-201ENST00000330334 STK39Q9UEW8 545 aa19.74■□□□□ 0.75
HDDC3-201ENST00000330334 DBR1Q9UK59 544 aaKnown RBP19.74■□□□□ 0.75
HDDC3-201ENST00000330334 MEIS3P2A8K0S8 358 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 ERLIN2O94905 339 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 GALTP07902 379 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 OR52Z1P0C646 297 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms