RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 PNMA6EA0A0J9YXQ4 647 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 CLK1P49759 484 aaKnown RBP15.14■□□□□ 0.01
COL7A1-201ENST00000328333 FBXO11Q86XK2 927 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 ASNSD1Q9NWL6 643 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 CDC42BPGQ6DT37 1551 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 MAP3K15Q6ZN16 1313 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 TESPA1A2RU30 521 aaPredicted RBP15.14■□□□□ 0.01
COL7A1-201ENST00000328333 OTUD7BQ6GQQ9 843 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 ADD3Q9UEY8 706 aaKnown RBP15.14■□□□□ 0.01
COL7A1-201ENST00000328333 PRDM1O75626 825 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 SOX5P35711 763 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 TRIM54Q9BYV2 358 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 BRAFP15056 766 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 CORO7P57737 925 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 P3H1Q32P28 736 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 MIS18BP1Q6P0N0 1132 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 EFL1Q7Z2Z2 1120 aaKnown RBP15.13■□□□□ 0.01
COL7A1-201ENST00000328333 ANKRD13CQ8N6S4 541 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 CCDC17Q96LX7 622 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 GINM1Q9NU53 330 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 NEURL1BA8MQ27 555 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 LDHAP00338 332 aaKnown RBP15.13■□□□□ 0.01
COL7A1-201ENST00000328333 KIAA1755Q5JYT7 1200 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 GAS2L3Q86XJ1 694 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 RAPGEF5Q92565 580 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 SELENONQ9NZV5 590 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 CFAP69A5D8W1 941 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 TCP11X1B4DZS4 312 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 RWDD3Q9Y3V2 267 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 FAM32AQ9Y421 112 aaKnown RBP15.13■□□□□ 0.01
COL7A1-201ENST00000328333 GPC5P78333 572 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 LRRC8EQ6NSJ5 796 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 NSMFQ6X4W1 530 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 CCT7Q99832 543 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 AP1M1Q9BXS5 423 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 TNPO2O14787 897 aaKnown RBP15.13■□□□□ 0.01
COL7A1-201ENST00000328333 TOM1O60784 492 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 ANGPT1Q15389 498 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 ELMSAN1Q6PJG2 1045 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 ARMCX4Q5H9R4 360 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 CLEC17AQ6ZS10 378 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 PASD1Q8IV76 773 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 RUBCNLQ9H714 662 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 SUPT3HO75486 399 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 OLFML2BQ68BL8 750 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 ZFRQ96KR1 1074 aaKnown RBP15.13■□□□□ 0.01
COL7A1-201ENST00000328333 FAM167BQ9BTA0 163 aa15.13■□□□□ 0.01
COL7A1-201ENST00000328333 TBKBP1A7MCY6 615 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 VCPP55072 806 aaKnown RBP15.12■□□□□ 0.01
COL7A1-201ENST00000328333 TIMM10P62072 90 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 PTPROQ16827 1216 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 LRRC4Q9HBW1 653 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 SCN3BQ9NY72 215 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 HACD3Q9P035 362 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 DCTN4Q9UJW0 460 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 PPIP5K2O43314 1243 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 FGAP02671 866 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 SLC1A1P43005 524 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 ADCY1Q08828 1119 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 AGBL1Q96MI9 1066 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 FRMD8Q9BZ67 464 aaPredicted RBP15.12■□□□□ 0.01
COL7A1-201ENST00000328333 MFSD14BQ5SR56 506 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 FAM193BQ96PV7 902 aaPredicted RBP15.12■□□□□ 0.01
COL7A1-201ENST00000328333 FTOQ9C0B1 505 aaKnown RBP eCLIP15.12■□□□□ 0.01
COL7A1-201ENST00000328333 KMT5AQ9NQR1 393 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 MAGEA13PA6NCF6 341 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 ALDH1B1P30837 517 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 PARD3BQ8TEW8 1205 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 ATP7BP35670 1465 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 ACTN3Q08043 901 aaPredicted RBP15.12■□□□□ 0.01
COL7A1-201ENST00000328333 SLC39A6Q13433 755 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 RANBP17Q9H2T7 1088 aaKnown RBP15.12■□□□□ 0.01
COL7A1-201ENST00000328333 MLXIPQ9HAP2 919 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 UTP6Q9NYH9 597 aaKnown RBP15.12■□□□□ 0.01
COL7A1-201ENST00000328333 MYH13Q9UKX3 1938 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 SLC26A4O43511 780 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 LSP1P33241 339 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 KCNQ4P56696 695 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 DYNLT1P63172 113 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 PURAQ00577 322 aaKnown RBP15.12■□□□□ 0.01
COL7A1-201ENST00000328333 KBTBD12Q3ZCT8 623 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 ZNF219Q9P2Y4 722 aaPredicted RBP15.12■□□□□ 0.01
COL7A1-201ENST00000328333 PCDHGB4Q9UN71 923 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 YEATS2Q9ULM3 1422 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 hCG_2014768A0A024R1R8 64 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 ITIH4Q14624 930 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 IKBIPQ70UQ0 350 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 TSSK1BQ9BXA7 367 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 KLHL31Q9H511 634 aa15.12■□□□□ 0.01
COL7A1-201ENST00000328333 TRAPPC3LQ5T215 181 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 BTNL9Q6UXG8 535 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 SLC52A2Q9HAB3 445 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 PSMC3IPQ9P2W1 217 aaPredicted RBP15.11■□□□□ 0.01
COL7A1-201ENST00000328333 ANAPC7Q9UJX3 599 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 TET3O43151 1660 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 IFNAR1P17181 557 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 ABHD8Q96I13 439 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 SH3GL1Q99961 368 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 POLD1P28340 1107 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 CYGBQ8WWM9 190 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 149.5 ms