RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.46□□□□□ -1.7
HMGB1-201ENST00000326004 JADE3Q92613 823 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 TEKT5Q96M29 485 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 FDXACB1Q9BRP7 624 aaPredicted RBP4.46□□□□□ -1.7
HMGB1-201ENST00000326004 SOX7Q9BT81 388 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 ACE2Q9BYF1 805 aaPredicted RBP4.46□□□□□ -1.7
HMGB1-201ENST00000326004 CDH19Q9H159 772 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 OR10A2Q9H208 303 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 MAGEL2Q9UJ55 1249 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 ZBTB21Q9ULJ3 1066 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 G3BP2Q9UN86 482 aaKnown RBP4.46□□□□□ -1.7
HMGB1-201ENST00000326004 GIT1Q9Y2X7 761 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 ZDHHC9Q9Y397 364 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 EID1Q9Y6B2 187 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 NOBOXO60393 691 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 ZNF888P0CJ79 500 aaPredicted RBP4.45□□□□□ -1.7
HMGB1-201ENST00000326004 SLC16A1P53985 500 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 MGAT5Q09328 741 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 MALLQ13021 153 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 NFYCQ13952 458 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 ADRM1Q16186 407 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 KRTAP19-4Q3LI73 84 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 MUM1L1Q5H9M0 696 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 FAM180AQ6UWF9 173 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 USP30Q70CQ3 517 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 SIAH1Q8IUQ4 282 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 KBTBD2Q8IY47 623 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 LGI4Q8N135 537 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 SLC7A6OSQ96CW6 309 aaPredicted RBP4.45□□□□□ -1.7
HMGB1-201ENST00000326004 UIMC1Q96RL1 719 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 NUP88Q99567 741 aaPredicted RBP4.45□□□□□ -1.7
HMGB1-201ENST00000326004 KIAA1683Q9H0B3 1180 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 GREM2Q9H772 168 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 JADE2Q9NQC1 790 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 CTDP1Q9Y5B0 961 aaPredicted RBP4.45□□□□□ -1.7
HMGB1-201ENST00000326004 SLC4A7Q9Y6M7 1214 aa4.45□□□□□ -1.7
HMGB1-201ENST00000326004 A0A1W2PR48 441 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 NDUFS2O75306 463 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 RFPL1O75677 317 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 LY86O95711 162 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 LTA4HP09960 611 aaKnown RBP4.44□□□□□ -1.7
HMGB1-201ENST00000326004 CT47B1P0C2W7 299 aaPredicted RBP4.44□□□□□ -1.7
HMGB1-201ENST00000326004 GAAP10253 952 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 HNRNPLP14866 589 aaKnown RBP eCLIP4.44□□□□□ -1.72e-8■□□□□ 9.1
HMGB1-201ENST00000326004 RRADP55042 308 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 ADKP55263 362 aaKnown RBP4.44□□□□□ -1.7
HMGB1-201ENST00000326004 CD69Q07108 199 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 ADAM15Q13444 863 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 ODF1Q14990 250 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 PPP2R5AQ15172 486 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 SURF1Q15526 300 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 NT5DC1Q5TFE4 455 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 GPR155Q7Z3F1 870 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 CLEC14AQ86T13 490 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 CMTR2Q8IYT2 770 aaKnown RBP4.44□□□□□ -1.7
HMGB1-201ENST00000326004 PLA2G15Q8NCC3 412 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 GLB1L3Q8NCI6 653 aaPredicted RBP4.44□□□□□ -1.7
HMGB1-201ENST00000326004 GCDHQ92947 438 aaPredicted RBP4.44□□□□□ -1.7
HMGB1-201ENST00000326004 CSRNP2Q9H175 543 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 SLC6A15Q9H2J7 730 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 C14orf93Q9H972 538 aaKnown RBP4.44□□□□□ -1.7
HMGB1-201ENST00000326004 MSL2Q9HCI7 577 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 ZIM2Q9NZV7 527 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 SAP30BPQ9UHR5 308 aaKnown RBP4.44□□□□□ -1.7
HMGB1-201ENST00000326004 SCOCQ9UIL1 159 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 ZNF180Q9UJW8 692 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 FAM184BQ9ULE4 1060 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 PNMA8BQ9ULN7 279 aaPredicted RBP4.44□□□□□ -1.7
HMGB1-201ENST00000326004 ANKRD6Q9Y2G4 727 aa4.44□□□□□ -1.7
HMGB1-201ENST00000326004 PMS2P1A4D2B8 440 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 C2orf78A6NCI8 922 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 ARHGAP6O43182 974 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 MTSS1O43312 755 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 TRIM13O60858 407 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 PHF2O75151 1096 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 SASH1O94885 1247 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 U2AF1L5P0DN76 240 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-201ENST00000326004 ZSCAN22P10073 491 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-201ENST00000326004 ZSCAN20P17040 1043 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-201ENST00000326004 C5AR1P21730 350 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 MCAMP43121 646 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 WNT3AP56704 352 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 U2AF1Q01081 240 aaKnown RBP eCLIP4.43□□□□□ -1.73e-11■■■■□ 22.7
HMGB1-201ENST00000326004 GAGE13Q4V321 117 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 C19orf54Q5BKX5 351 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 TAS1R1Q7RTX1 841 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 RAVER1Q8IY67 606 aaKnown RBP4.43□□□□□ -1.7
HMGB1-201ENST00000326004 CHPFQ8IZ52 775 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 MARCH10Q8NA82 808 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-201ENST00000326004 PIK3C3Q8NEB9 887 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 HSPBAP1Q96EW2 488 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 SLC2A13Q96QE2 648 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 ADI1Q9BV57 179 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 RTFDC1Q9BY42 306 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-201ENST00000326004 RHOBTB2Q9BYZ6 727 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 USP40Q9NVE5 1235 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 IP6K2Q9UHH9 426 aa4.43□□□□□ -1.7
HMGB1-201ENST00000326004 FAM171A2A8MVW0 826 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 TSPAN6O43657 245 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 B4GALT3O60512 393 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms