RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 ECM1Q16610 540 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 CATSPERGQ6ZRH7 1159 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 RPS6KC1Q96S38 1066 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 KRT12Q99456 494 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 CCDC94Q9BW85 323 aaPredicted RBP10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 EPC1Q9H2F5 836 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 DPH5Q9H2P9 285 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 SMARCAD1Q9H4L7 1026 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 MAP3K20Q9NYL2 800 aaKnown RBP10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 HESX1Q9UBX0 185 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 MTRF1LQ9UGC7 380 aaKnown RBP10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 CPA4Q9UI42 421 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 USP20Q9Y2K6 914 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 RIPK3Q9Y572 518 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 NUB1Q9Y5A7 615 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 TOGARAM1Q9Y4F4 1720 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 AKAP3O75969 853 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 PRKCBP05771 671 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 CIITAP33076 1130 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 RARRES1P49788 294 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 KCNA1Q09470 495 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 LY6KQ17RY6 165 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 TRIM50Q86XT4 487 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 FBXL13Q8NEE6 735 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 RPGRIP1Q96KN7 1286 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 KIAA1586Q9HCI6 787 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 CWC15Q9P013 229 aaKnown RBP10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 RGS17Q9UGC6 210 aaPredicted RBP10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 PACSIN2Q9UNF0 486 aaPredicted RBP10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 EIF3CLB5ME19 914 aaKnown RBP10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 CXCL11O14625 94 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 KLRC4O43908 158 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 IFNB1P01574 187 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 MAPK4P31152 587 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 GTF2A2P52657 109 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 EIF3CQ99613 913 aaKnown RBP10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 NID2Q14112 1375 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 EIF3DO15371 548 aaKnown RBP eCLIP10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 ATP9AO75110 1047 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 SEC31AO94979 1220 aaKnown RBP10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 CYP3A4P08684 503 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 PPFIA1Q13136 1202 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 KAZNQ674X7 775 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 RSPH3Q86UC2 560 aa10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 RPUSD2Q8IZ73 545 aaKnown RBP10.03□□□□□ -0.8
TMEM39A-201ENST00000319172 PIK3CDO00329 1044 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 PDHXO00330 501 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 SLC16A3O15427 465 aaKnown RBP10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 GH1P01241 217 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 SUPT20HL2P0C7V6 817 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 NPTX2P47972 431 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 GUCY2DQ02846 1103 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 PPATQ06203 517 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 IFRD2Q12894 506 aaPredicted RBP10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 KIAA1755Q5JYT7 1200 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 ZNF720Q7Z2F6 126 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 RABGGTAQ92696 567 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 RNF34Q969K3 372 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 ERGIC2Q96RQ1 377 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 SPDYE16A6NNV3 312 aaPredicted RBP10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 H0YHG0 523 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 CYP26A1O43174 497 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 PSMD10O75832 226 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 C6orf222P0C671 652 aaPredicted RBP10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 MYZAPP0CAP1 466 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 CASP5P51878 434 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 ZNF667Q5HYK9 610 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 CBWD2Q8IUF1 395 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 PROCA1Q8NCQ7 364 aaPredicted RBP10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 ETNPPLQ8TBG4 499 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 MED10Q9BTT4 135 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 TIPINQ9BVW5 301 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 PLIN4Q96Q06 1357 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 ERVK-24P63145 666 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 APBA1Q02410 837 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 PPP2R5CQ13362 524 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 TREML2Q5T2D2 321 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 TWF2Q6IBS0 349 aaKnown RBP10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 USP50Q70EL3 339 aaPredicted RBP10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 VSIG10LQ86VR7 867 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 MTMR14Q8NCE2 650 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 GMLQ99445 158 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 PI4K2AQ9BTU6 479 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 C2orf40Q9H1Z8 148 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 CYP39A1Q9NYL5 469 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 TBX20Q9UMR3 447 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 BTAF1O14981 1849 aa10.02□□□□□ -0.81
TMEM39A-201ENST00000319172 SYNJ2BP-COX16A0A087WUM0 186 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 OPA1O60313 960 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 KIF4AO95239 1232 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 POLR2BP30876 1174 aaKnown RBP10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 SOX5P35711 763 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 CLCN3P51790 818 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 SLC12A3P55017 1021 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 ZNF280AP59817 542 aaPredicted RBP10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 ARHGEF6Q15052 776 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 ZNF699Q32M78 642 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 SPOUT1Q5T280 376 aaKnown RBP10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 EFCAB12Q6NXP0 572 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms