RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 CSPP1Q1MSJ5 1256 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 ZNF697Q5TEC3 545 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 CDCA2Q69YH5 1023 aaPredicted RBP12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 FAM109BQ6ICB4 259 aaPredicted RBP12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 SHC4Q6S5L8 630 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 SLC24A5Q71RS6 500 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 IFNLR1Q8IU57 520 aaPredicted RBP12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 NPAS4Q8IUM7 802 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 IQUBQ8NA54 791 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 LINC01599Q8WXQ3 324 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 TOP1MTQ969P6 601 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 DHX58Q96C10 678 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 TIFAQ96CG3 184 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 LRCH3Q96II8 777 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 PBX4Q9BYU1 374 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 PANK2Q9BZ23 570 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 LRRC27Q9C0I9 530 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 TMX1Q9H3N1 280 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 ZHX3Q9H4I2 956 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 KMT5AQ9NQR1 393 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 CHST12Q9NRB3 414 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 RGS18Q9NS28 235 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 AGPAT5Q9NUQ2 364 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 PRMT7Q9NVM4 692 aaPredicted RBP12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 LARSQ9P2J5 1176 aaKnown RBP12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 PCDHA11Q9Y5I1 949 aa12.15□□□□□ -0.46
CSPG4P1Y-201ENST00000306641 COL4A6Q14031 1691 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TMEM265A0A087WTH1 108 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 H0YCG3 227 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MGEA5O60502 916 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PRKCBP05771 671 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SKIP12755 728 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 LIG1P18858 919 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 FXR1P51114 621 aaKnown RBP eCLIP12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 RAB27AP51159 221 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 EFNA5P52803 228 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CACNB1Q02641 598 aaPredicted RBP12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MBTD1Q05BQ5 628 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MAPK6Q16659 721 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TPRNQ4KMQ1 711 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 AXDND1Q5T1B0 1012 aaPredicted RBP12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 RESP18Q5W5W9 173 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ADALQ6DHV7 355 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 NOTUMQ6P988 496 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TMCO2Q7Z6W1 182 aaPredicted RBP12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 BSNDQ8WZ55 320 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CHAMP1Q96JM3 812 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PRIMPOLQ96LW4 560 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 REEP2Q9BRK0 252 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TNMDQ9H2S6 317 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 NKX2-4Q9H2Z4 354 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MINDY3Q9H8M7 445 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MAGEF1Q9HAY2 307 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PARVGQ9HBI0 331 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 GDPD2Q9HCC8 539 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 RBM19Q9Y4C8 960 aaKnown RBP12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 INSL6Q9Y581 213 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PCDHB7Q9Y5E2 793 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CITO14578 2027 aa12.14□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 COL4A4P53420 1690 aaPredicted RBP12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 A0A087X0B3 334 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 NPHP3-ACAD11A0A0J9YXS1 232 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 RBAK-RBAKDNI3L0D1 243 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 POLR2DO15514 142 aaKnown RBP12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TSPAN1O60635 241 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PLS3P13797 630 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PBX2P40425 430 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 NPTX2P47972 431 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 AMPD3Q01432 767 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MAPK7Q13164 816 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 DSC3Q14574 896 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PPP2R2DQ66LE6 453 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 GPR153Q6NV75 609 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CEP57L1Q8IYX8 460 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MYCT1Q8N699 235 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 LRRC15Q8TF66 581 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CCDC51Q96ER9 411 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 RAD9AQ99638 391 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 KIFC3Q9BVG8 833 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TRIM6Q9C030 488 aaPredicted RBP12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SLC28A3Q9HAS3 691 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 POLD4Q9HCU8 107 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TSHZ2Q9NRE2 1034 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TMEM161AQ9NX61 479 aa12.13□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ADGRA3Q8IWK6 1321 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 C9IYK1 514 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 K7ENM7 598 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 K7ERI5 159 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 N4BP3O15049 544 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 HOXA2O43364 376 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CA3P07451 260 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ABCD1P33897 745 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 STRN3Q13033 797 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PRPF4BQ13523 1007 aaKnown RBP12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 GIT2Q14161 759 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 FAM187BQ17R55 369 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 NAALADL2Q58DX5 795 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ARSHQ5FYA8 562 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PPP4R3CPQ6ZMV5 832 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 DYMQ7RTS9 669 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms