RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FAM105AQ9NUU6 356 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 TBC1D13Q9NVG8 400 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 SUCLA2Q9P2R7 463 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 LIMD1Q9UGP4 676 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 CDH22Q9UJ99 828 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 PLXNA3P51805 1871 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 VPS13AQ96RL7 3174 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 CYP3A7-CYP3A51PA0A087WV96 503 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 A0A087WZ62 844 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 SPDYE4A6NLX3 237 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 CSDE1O75534 798 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 GALTP07902 379 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 CYP3A7P24462 503 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 NLRP5P59047 1200 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 NTRK3Q16288 839 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 CCDC149Q6ZUS6 474 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 CATSPER4Q7RTX7 472 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 TRIM22Q8IYM9 498 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 TBCKQ8TEA7 893 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 SLC22A17Q8WUG5 538 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 JAKMIP1Q96N16 626 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 FDXACB1Q9BRP7 624 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 SLC26A6Q9BXS9 759 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 AGXT2Q9BYV1 514 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 NRDE2Q9H7Z3 1164 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 VPS54Q9P1Q0 977 aa16.59■□□□□ 0.25
CCDC88B-201ENST00000301897 DMDP11532 3685 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 DKC1O60832 514 aaKnown RBP eCLIP16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 MAFO75444 373 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 ASGR2P07307 311 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 EPCAMP16422 314 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 PSMA5P28066 241 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 DRP2Q13474 957 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 ELMSAN1Q6PJG2 1045 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 MOXD1Q6UVY6 613 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 RHPN2Q8IUC4 686 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 C12orf76Q8N812 135 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 TMEM105Q8N8V8 129 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 AUTS2Q8WXX7 1259 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 CEP89Q96ST8 783 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 KANSL3Q9P2N6 904 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 DPP7Q9UHL4 492 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 INPP5FQ9Y2H2 1132 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 PPME1Q9Y570 386 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 DENND4AQ7Z401 1863 aa16.58■□□□□ 0.24
CCDC88B-201ENST00000301897 CNTNAP2Q9UHC6 1331 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 DDX11L8A8MPP1 907 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 EDIL3O43854 480 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 OFD1O75665 1012 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 WEE2P0C1S8 567 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 PSMC5P62195 406 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 PTPN14Q15678 1187 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 GALNT17Q6IS24 598 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 B3GNT9Q6UX72 402 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 C15orf39Q6ZRI6 1047 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 GPR149Q86SP6 731 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 TMEM173Q86WV6 379 aaPredicted RBP16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 LPPQ93052 612 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 PCDHA4Q9UN74 947 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 SSX2IPQ9Y2D8 614 aa16.57■□□□□ 0.24
CCDC88B-201ENST00000301897 PRR23AA6NEV1 266 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 STBD1O95210 358 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 CPA1P15085 419 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 RPS6KB1P23443 525 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 KLRC2P26717 231 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 SLC11A1P49279 550 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 TDGQ13569 410 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 TMC5Q6UXY8 1006 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 CYP26C1Q6V0L0 522 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 CENPQQ7L2Z9 268 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 SLC7A3Q8WY07 619 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 NLRP4Q96MN2 994 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 FAM193BQ96PV7 902 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 TMEM175Q9BSA9 504 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 GBP3Q9H0R5 595 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 MRPL17Q9NRX2 175 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 AGPAT5Q9NUQ2 364 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 PCDHB2Q9Y5E7 798 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 ZNF292O60281 2723 aa16.56■□□□□ 0.24
CCDC88B-201ENST00000301897 GAS2O43903 313 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 ALDH2P05091 517 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 HSPA4P34932 840 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 CLCN4P51793 760 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 EVCP57679 992 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 SSRP1Q08945 709 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 SRGAP1Q7Z6B7 1085 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 MRPL10Q7Z7H8 261 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 DAGLBQ8NCG7 672 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 CMASQ8NFW8 434 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 ETNPPLQ8TBG4 499 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 MBOAT7Q96N66 472 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 RTP3Q9BQQ7 232 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 RSAD1Q9HA92 442 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 UBN1Q9NPG3 1134 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 IGSF9Q9P2J2 1179 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 DNAJB4Q9UDY4 337 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 COL4A3BPQ9Y5P4 624 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 SNX14Q9Y5W7 946 aa16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 EP300Q09472 2414 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-201ENST00000301897 PDIA3P30101 505 aaKnown RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms