RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 LGALS16A8MUM7 142 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 ATP4AP20648 1035 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 GSTT1P30711 240 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 SNX30Q5VWJ9 437 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 TERB1Q8NA31 727 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 NSL1Q96IY1 281 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 POLR2BP30876 1174 aaKnown RBP12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 LONRF1Q17RB8 773 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 KCNH5Q8NCM2 988 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 NUP85Q9BW27 656 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 ARMCX4Q5H9R4 360 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 C11orf74Q86VG3 221 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 PRCCQ92733 491 aaPredicted RBP12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 XAGE2Q96GT9 111 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 DHX36Q9H2U1 1008 aaKnown RBP12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 PITPNM2Q9BZ72 1349 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 PDZK1P1A8MUH7 402 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 ARHGEF1Q92888 912 aaKnown RBP12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 KLHL4Q9C0H6 718 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 FAM8A1Q9UBU6 413 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 CDC27P30260 824 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 COG2Q14746 738 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 CAV1Q03135 178 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 C16orf89Q6UX73 402 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 NT5C1BQ96P26 610 aa12.46□□□□□ -0.41
SHROOM3-201ENST00000296043 POLR3AO14802 1390 aaPredicted RBP12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 KLHL17Q6TDP4 642 aa12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 MAGEF1Q9HAY2 307 aa12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 FHOD1Q9Y613 1164 aa12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 LIG4P49917 911 aa12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 MPP6Q9NZW5 540 aa12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 F8VZ95 297 aa12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 C21orf59P57076 290 aa12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 PPIDQ08752 370 aaKnown RBP12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 PDIA2Q13087 525 aaKnown RBP12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 ACAP3Q96P50 834 aa12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 EPAS1Q99814 870 aa12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 SUGT1Q9Y2Z0 365 aa12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 PODXLO00592 558 aa12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 GSNP06396 782 aa12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 TRIM51Q9BSJ1 452 aa12.46□□□□□ -0.42
SHROOM3-201ENST00000296043 PIK3R2O00459 728 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 RNF19BQ6ZMZ0 732 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 RNF135Q8IUD6 432 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 KBTBD3Q8NAB2 608 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 FAM96AQ9H5X1 160 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 STK39Q9UEW8 545 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 PYGMP11217 842 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 PECAM1P16284 738 aaPredicted RBP12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 ANGPT2O15123 496 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 PEX5P50542 639 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 TSC22D1Q15714 1073 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 IZUMO2Q6UXV1 221 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 REXO4Q9GZR2 422 aaKnown RBP12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 GOLPH3LQ9H4A5 285 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 FRMPD2Q68DX3 1309 aaPredicted RBP12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 PIK3C2GO75747 1445 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 H3BQF6 201 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 TRIM13O60858 407 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 DDAH1O94760 285 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 PSMC3P17980 439 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 TRIM74Q86UV6 250 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 TRIM73Q86UV7 250 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 ANKMY2Q8IV38 441 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 MAML3Q96JK9 1138 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 TSR3Q9UJK0 312 aaKnown RBP12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 ZNF532Q9HCE3 1301 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 IGF1RP08069 1367 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 KPNA7A9QM74 516 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 CLIC2O15247 247 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 LAMC2Q13753 1193 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 R3HDM1Q15032 1099 aaKnown RBP12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 PNKPQ96T60 521 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 ADAMTS1Q9UHI8 967 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 ADGRG1Q9Y653 693 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 PTK2Q05397 1052 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 MYCBPAPQ8TBZ2 947 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 DDX56Q9NY93 547 aaKnown RBP12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 KIAA1024Q9UPX6 916 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 NDUFA5Q16718 116 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 FAM192AQ9GZU8 254 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 GLT8D2Q9H1C3 349 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 MMADHCQ9H3L0 296 aaPredicted RBP12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 KPNA4O00629 521 aaPredicted RBP12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 HMOX2P30519 316 aa12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 TRIP4Q15650 581 aaPredicted RBP12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 NSUN7Q8NE18 718 aaKnown RBP12.45□□□□□ -0.42
SHROOM3-201ENST00000296043 TMEM247A6NEH6 219 aa12.44□□□□□ -0.42
SHROOM3-201ENST00000296043 FAM47DPA6NHR8 397 aa12.44□□□□□ -0.42
SHROOM3-201ENST00000296043 PRPSAP2O60256 369 aa12.44□□□□□ -0.42
SHROOM3-201ENST00000296043 LGR5O75473 907 aa12.44□□□□□ -0.42
SHROOM3-201ENST00000296043 SLC1A4P43007 532 aa12.44□□□□□ -0.42
SHROOM3-201ENST00000296043 ARMC4Q5T2S8 1044 aa12.44□□□□□ -0.42
SHROOM3-201ENST00000296043 PAIP1Q9H074 479 aaKnown RBP12.44□□□□□ -0.42
SHROOM3-201ENST00000296043 NFKBIL1Q9UBC1 381 aaPredicted RBP12.44□□□□□ -0.42
SHROOM3-201ENST00000296043 PLEKHG2Q9H7P9 1386 aa12.44□□□□□ -0.42
SHROOM3-201ENST00000296043 PSMA2P25787 234 aa12.44□□□□□ -0.42
SHROOM3-201ENST00000296043 DEPTORQ8TB45 409 aa12.44□□□□□ -0.42
SHROOM3-201ENST00000296043 FANCEQ9HB96 536 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms