RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ARHGEF16Q5VV41 709 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 IFT20Q8IY31 132 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 AP1M1Q9BXS5 423 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 PPP1R1BQ9UD71 204 aaPredicted RBP21.79■■□□□ 1.08
VPS53-201ENST00000291074 VWA5AO00534 786 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 ZBED4O75132 1171 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 LYPLA2O95372 231 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 LMNB1P20700 586 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 BAATQ14032 418 aaPredicted RBP21.78■■□□□ 1.08
VPS53-201ENST00000291074 XKR9Q5GH70 373 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 FAM102BQ5T8I3 360 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 EMBQ6PCB8 327 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 SLFN11Q7Z7L1 901 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 SLC20A1Q8WUM9 679 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 CASKIN2Q8WXE0 1202 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 ZKSCAN4Q969J2 545 aaPredicted RBP21.78■■□□□ 1.08
VPS53-201ENST00000291074 UBE2TQ9NPD8 197 aaPredicted RBP21.78■■□□□ 1.08
VPS53-201ENST00000291074 TCEAL9Q9UHQ7 104 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 TMEM59LQ9UK28 342 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 STXBP5LQ9Y2K9 1186 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 GJA3Q9Y6H8 435 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 DOCK1Q14185 1865 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 A0A0A6YYK5 440 aaPredicted RBP21.78■■□□□ 1.08
VPS53-201ENST00000291074 BAG6P46379 1132 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 INTS8Q75QN2 995 aaKnown RBP21.78■■□□□ 1.08
VPS53-201ENST00000291074 ARHGEF26Q96DR7 871 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 RNF146Q9NTX7 359 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 INTUQ9ULD6 942 aa21.78■■□□□ 1.08
VPS53-201ENST00000291074 MAPTP10636 758 aaKnown RBP21.77■■□□□ 1.08
VPS53-201ENST00000291074 NT5DC3Q86UY8 548 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 C4orf19Q8IY42 314 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 SLC35G2Q8TBE7 412 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 AFAP1L1Q8TED9 768 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 NOC2LQ9Y3T9 749 aaKnown RBP21.77■■□□□ 1.08
VPS53-201ENST00000291074 TELO2Q9Y4R8 837 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 ATP8B3O60423 1300 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 BUB1BO60566 1050 aaPredicted RBP21.77■■□□□ 1.08
VPS53-201ENST00000291074 ADRB2P07550 413 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 SOX10P56693 466 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 PSMC5P62195 406 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 GTF2BQ00403 316 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 MYBPC2Q14324 1141 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 XXYLT1Q8NBI6 393 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 KAT5Q92993 513 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 PBKQ96KB5 322 aa21.77■■□□□ 1.08
VPS53-201ENST00000291074 WDR64B1ANS9 1081 aa21.76■■□□□ 1.07
VPS53-201ENST00000291074 CES2O00748 559 aa21.76■■□□□ 1.07
VPS53-201ENST00000291074 TNNC1P63316 161 aa21.76■■□□□ 1.07
VPS53-201ENST00000291074 ALCAMQ13740 583 aa21.76■■□□□ 1.07
VPS53-201ENST00000291074 ZSCAN26Q16670 478 aa21.76■■□□□ 1.07
VPS53-201ENST00000291074 CAVIN3Q969G5 261 aa21.76■■□□□ 1.07
VPS53-201ENST00000291074 BRCA1P38398 1863 aaKnown RBP21.76■■□□□ 1.07
VPS53-201ENST00000291074 RLFQ13129 1914 aa21.76■■□□□ 1.07
VPS53-201ENST00000291074 TNFAIP3P21580 790 aa21.76■■□□□ 1.07
VPS53-201ENST00000291074 GUCY2FP51841 1108 aa21.76■■□□□ 1.07
VPS53-201ENST00000291074 THAP2Q9H0W7 228 aa21.76■■□□□ 1.07
VPS53-201ENST00000291074 NCANO14594 1321 aa21.76■■□□□ 1.07
VPS53-201ENST00000291074 CCDC169A6NNP5 214 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 TMEM253P0C7T8 217 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 SF3B2Q13435 895 aaKnown RBP21.75■■□□□ 1.07
VPS53-201ENST00000291074 KIF22Q14807 665 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 ANO5Q75V66 913 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 ACTRT1Q8TDG2 376 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 SLC16A10Q8TF71 515 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 SCFD2Q8WU76 684 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 RFFLQ8WZ73 363 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 MAP3K20Q9NYL2 800 aaKnown RBP21.75■■□□□ 1.07
VPS53-201ENST00000291074 ANKRD63C9JTQ0 380 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 SORBS3O60504 671 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 EPC2Q52LR7 807 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 CBWD2Q8IUF1 395 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 C12orf56Q8IXR9 622 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 LMBR1Q8WVP7 490 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 CTNNBL1Q8WYA6 563 aaPredicted RBP21.75■■□□□ 1.07
VPS53-201ENST00000291074 SAAL1Q96ER3 474 aa21.75■■□□□ 1.07
VPS53-201ENST00000291074 SUCLA2Q9P2R7 463 aaPredicted RBP21.75■■□□□ 1.07
VPS53-201ENST00000291074 CNOT7Q9UIV1 285 aaKnown RBP21.75■■□□□ 1.07
VPS53-201ENST00000291074 PGRMC1O00264 195 aaKnown RBP21.74■■□□□ 1.07
VPS53-201ENST00000291074 ITGA4P13612 1032 aa21.74■■□□□ 1.07
VPS53-201ENST00000291074 JAK3P52333 1124 aa21.74■■□□□ 1.07
VPS53-201ENST00000291074 NCKAP1LP55160 1127 aa21.74■■□□□ 1.07
VPS53-201ENST00000291074 SP4Q02446 784 aa21.74■■□□□ 1.07
VPS53-201ENST00000291074 PAK2Q13177 524 aa21.74■■□□□ 1.07
VPS53-201ENST00000291074 DDX47Q9H0S4 455 aaKnown RBP21.74■■□□□ 1.07
VPS53-201ENST00000291074 ACTN2P35609 894 aa21.74■■□□□ 1.07
VPS53-201ENST00000291074 BACE1P56817 501 aa21.74■■□□□ 1.07
VPS53-201ENST00000291074 TGFB2P61812 414 aa21.74■■□□□ 1.07
VPS53-201ENST00000291074 KRT76Q01546 638 aa21.74■■□□□ 1.07
VPS53-201ENST00000291074 SNRNP48Q6IEG0 339 aaKnown RBP21.74■■□□□ 1.07
VPS53-201ENST00000291074 GOLGA6L1Q8N7Z2 621 aa21.74■■□□□ 1.07
VPS53-201ENST00000291074 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.74■■□□□ 1.079e-7■■□□□ 12.3
VPS53-201ENST00000291074 ADSSP30520 456 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 HMGCS2P54868 508 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 ERVK-9P63128 1117 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 ZNF746Q6NUN9 644 aaPredicted RBP21.73■■□□□ 1.07
VPS53-201ENST00000291074 SYCE1Q8N0S2 351 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 BSNDQ8WZ55 320 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 HES6Q96HZ4 224 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 WRNIP1Q96S55 665 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 AGPAT1Q99943 283 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms