RNA–Protein interactions for RNA: ENST00000261897.5

PRPF40B-201, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRPF40B, Length 3,602 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-201ENST00000261897 PICK1Q9NRD5 415 aa17.08■□□□□ 0.33
PRPF40B-201ENST00000261897 ANAPC5Q9UJX4 755 aa17.08■□□□□ 0.33
PRPF40B-201ENST00000261897 RIC1Q4ADV7 1423 aa17.08■□□□□ 0.33
PRPF40B-201ENST00000261897 ADAMTS2O95450 1211 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 LINGO3P0C6S8 592 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 SKIP12755 728 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 KRT5P13647 590 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 ABL2P42684 1182 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 AUHQ13825 339 aaKnown RBP17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 PPP1R15BQ5SWA1 713 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 CRELD2Q6UXH1 353 aaPredicted RBP17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 FAM186BQ8IYM0 893 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 MKNK1Q9BUB5 465 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 BCAS3Q9H6U6 928 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 UBE2TQ9NPD8 197 aaPredicted RBP17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 CORO1CQ9ULV4 474 aaPredicted RBP17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 BZW2Q9Y6E2 419 aaKnown RBP17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 TCRBV7S2A1N4TA0A589 114 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 FAM196BA6NMK8 535 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 ATF2P15336 505 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 PON1P27169 355 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 PTDSS1P48651 473 aaKnown RBP17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 RCAN1P53805 252 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 CDR2Q01850 454 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 ZFP69BQ9UJL9 534 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 DNM3Q9UQ16 869 aa17.08■□□□□ 0.32
PRPF40B-201ENST00000261897 MAPK13O15264 365 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 GYG2O15488 501 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 CETN2P41208 172 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 UBXN2AP68543 259 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 KRT17Q04695 432 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 BLMHQ13867 455 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 ASTE1Q2TB18 679 aaPredicted RBP17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 SYCP2LQ5T4T6 812 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 CPNE8Q86YQ8 564 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 CCDC127Q96BQ5 260 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 SH2D3AQ9BRG2 576 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 CRYBG1Q9Y4K1 1723 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 ANKRD63C9JTQ0 380 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 DDX39AO00148 427 aaKnown RBP17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 CAPN9O14815 690 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 STRN3Q13033 797 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 CEP128Q6ZU80 1094 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 MAB21L3Q8N8X9 362 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 SLC30A5Q8TAD4 765 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 SNRNP27Q8WVK2 155 aaKnown RBP17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 ATXN2LQ8WWM7 1075 aaKnown RBP17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 RFFLQ8WZ73 363 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 KIAA1683Q9H0B3 1180 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 PARP2Q9UGN5 583 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 SLC12A4Q9UP95 1085 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 AFF2P51816 1311 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 RGPD1P0DJD0 1748 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 ERVV-2B6SEH9 535 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 CALUO43852 315 aaPredicted RBP17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 BAG3O95817 575 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 MMP13P45452 471 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 FYB2Q5VWT5 728 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 CCNJLQ8IV13 435 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 RUNDC3BQ96NL0 473 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 MAD2L2Q9UI95 211 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 FRMD4BQ9Y2L6 1034 aa17.07■□□□□ 0.32
PRPF40B-201ENST00000261897 RIPK2O43353 540 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 FERP16591 822 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 TRAF1Q13077 416 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 ECM1Q16610 540 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 ZC2HC1CQ53FD0 456 aaPredicted RBP17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 RBM46Q8TBY0 533 aaKnown RBP17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 BRIP1Q9BX63 1249 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 TMEM165Q9HC07 324 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 IL17RBQ9NRM6 502 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 KLHL11Q9NVR0 708 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 C5orf60A6NFR6 353 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 NR3C1P04150 777 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 COMTP21964 271 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 CTNNA2P26232 953 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 ZNF268Q14587 947 aaPredicted RBP17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 RNF207Q6ZRF8 634 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 ZNF572Q7Z3I7 529 aaPredicted RBP17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 TRIM59Q8IWR1 403 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 SCFD1Q8WVM8 642 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 ZNF653Q96CK0 615 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 L3MBTL3Q96JM7 780 aaPredicted RBP17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 SYT15Q9BQS2 421 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 PAGR1Q9BTK6 254 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 SUCLA2Q9P2R7 463 aaPredicted RBP17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 RGPD8O14715 1765 aaPredicted RBP17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 ARHGAP42A6NI28 874 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 ATP9AO75110 1047 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 AKAP3O75969 853 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 EPC2Q52LR7 807 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 PALB2Q86YC2 1186 aa17.06■□□□□ 0.32
PRPF40B-201ENST00000261897 FLT1P17948 1338 aa17.05■□□□□ 0.32
PRPF40B-201ENST00000261897 IGSF9BQ9UPX0 1349 aa17.05■□□□□ 0.32
PRPF40B-201ENST00000261897 ATF7P17544 494 aaPredicted RBP17.05■□□□□ 0.32
PRPF40B-201ENST00000261897 LMNB1P20700 586 aa17.05■□□□□ 0.32
PRPF40B-201ENST00000261897 RPS6KA3P51812 740 aa17.05■□□□□ 0.32
PRPF40B-201ENST00000261897 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.05■□□□□ 0.32
PRPF40B-201ENST00000261897 C10orf76Q5T2E6 689 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms