RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 ATP5OP48047 213 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 PLD1Q13393 1074 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 EAPPQ56P03 285 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-202ENST00000261517 PRUNE1Q86TP1 453 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 RCOR2Q8IZ40 523 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 GPD1LQ8N335 351 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 CALML6Q8TD86 181 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 TMEM47Q9BQJ4 181 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 TLDC2A0PJX2 215 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 SPARCL1Q14515 664 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 FIGNQ5HY92 759 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 MTHFD1LQ6UB35 978 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 RHOT1Q8IXI2 618 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 DNERQ8NFT8 737 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 TRERF1Q96PN7 1200 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 ZBTB18Q99592 522 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 UPF3AQ9H1J1 476 aaKnown RBP4.61□□□□□ -1.67
VPS13C-202ENST00000261517 SLC39A2Q9NP94 309 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 CAPN11Q9UMQ6 739 aa4.61□□□□□ -1.67
VPS13C-202ENST00000261517 MAPK13O15264 365 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ZRANB2O95218 330 aaKnown RBP eCLIP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 GTF2A2P52657 109 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ARHGAP44Q17R89 818 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 PROSER3Q2NL68 480 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 NAT9Q9BTE0 207 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 STK33Q9BYT3 514 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 SPON1Q9HCB6 807 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 PRR29P0C7W0 189 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 VAMP7P51809 220 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 SGSM1Q2NKQ1 1148 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 SETD3Q86TU7 594 aaPredicted RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 NELFCDQ8IXH7 590 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 MIPOL1Q8TD10 442 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ASAP3Q8TDY4 903 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ANKS1AQ92625 1134 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 EML4Q9HC35 981 aaKnown RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ST7Q9NRC1 585 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 SLC9A2Q9UBY0 812 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 PACSIN2Q9UNF0 486 aaPredicted RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 SMG5Q9UPR3 1016 aaKnown RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 CFAP73A6NFT4 308 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 MGEA5O60502 916 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 RTN2O75298 545 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ECE1P42892 770 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 DR1Q01658 176 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 CERKQ8TCT0 537 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 SCFD2Q8WU76 684 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 FOPNLQ96NB1 174 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 TRIM54Q9BYV2 358 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ANKFY1Q9P2R3 1169 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 DISP2A7MBM2 1401 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 MST1RQ04912 1400 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 OPLAHO14841 1288 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ZBED1O96006 694 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ZNF484Q5JVG2 852 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 RFX6Q8HWS3 928 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 RPUSD2Q8IZ73 545 aaKnown RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 SYNE4Q8N205 404 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 GPKOWQ92917 476 aaPredicted RBP eCLIP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 LRGUKQ96M69 825 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 CENPKQ9BS16 269 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 CPSF2Q9P2I0 782 aaKnown RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 A0A087WUV0 522 aaPredicted RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 CES2O00748 559 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 RHOBTB3O94955 611 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 CCT5P48643 541 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 COPS2P61201 443 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 RBP5P82980 135 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 SLC4A8Q2Y0W8 1093 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 TRMT10CQ7L0Y3 403 aaKnown RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ZNF589Q86UQ0 364 aaPredicted RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 MYPNQ86TC9 1320 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 RAB27AP51159 221 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 NPEPPSP55786 919 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 CREMQ03060 361 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 IQCB1Q15051 598 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 TTBK2Q6IQ55 1244 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 RSBN1LQ6PCB5 846 aaPredicted RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 PUS7LQ9H0K6 701 aaKnown RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 TMEM60Q9H2L4 133 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 MTMR4Q9NYA4 1195 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 LIMA1Q9UHB6 759 aaKnown RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 GFAPP14136 432 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 SP4Q02446 784 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 STAT4Q14765 748 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 RBBP5Q15291 538 aaKnown RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 KRT31Q15323 416 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 UAP1Q16222 522 aaPredicted RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ATP11CQ8NB49 1132 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 SUGCTQ9HAC7 445 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 HBP1O60381 514 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 GPC4O75487 556 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 HOXB8P17481 243 aaPredicted RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ELAVL2Q12926 359 aaKnown RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ALKBH5Q6P6C2 394 aaKnown RBP4.6□□□□□ -1.67
VPS13C-202ENST00000261517 LINC00523Q86TU6 105 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ZNF280CQ8ND82 737 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 SCFD1Q8WVM8 642 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 ZDHHC15Q96MV8 337 aa4.6□□□□□ -1.67
VPS13C-202ENST00000261517 RILPQ96NA2 401 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms