RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 KIAA1755Q5JYT7 1200 aa20.25■□□□□ 0.83
CPSF3-201ENST00000238112 YTHDF3Q7Z739 585 aaKnown RBP20.25■□□□□ 0.83
CPSF3-201ENST00000238112 PALB2Q86YC2 1186 aa20.25■□□□□ 0.83
CPSF3-201ENST00000238112 ACER1Q8TDN7 264 aa20.25■□□□□ 0.83
CPSF3-201ENST00000238112 ZNF219Q9P2Y4 722 aaPredicted RBP20.25■□□□□ 0.83
CPSF3-201ENST00000238112 ATP8A1Q9Y2Q0 1164 aa20.25■□□□□ 0.83
CPSF3-201ENST00000238112 EP400Q96L91 3159 aa20.25■□□□□ 0.83
CPSF3-201ENST00000238112 MYBPC2Q14324 1141 aa20.25■□□□□ 0.83
CPSF3-201ENST00000238112 COL23A1Q86Y22 540 aaPredicted RBP20.25■□□□□ 0.83
CPSF3-201ENST00000238112 ATP8B4Q8TF62 1192 aa20.25■□□□□ 0.83
CPSF3-201ENST00000238112 CHURC1Q8WUH1 139 aa20.25■□□□□ 0.83
CPSF3-201ENST00000238112 KAT2BQ92831 832 aa20.25■□□□□ 0.83
CPSF3-201ENST00000238112 UBE2TQ9NPD8 197 aaPredicted RBP20.25■□□□□ 0.83
CPSF3-201ENST00000238112 COG5Q9UP83 839 aa20.25■□□□□ 0.83
CPSF3-201ENST00000238112 TMX2Q9Y320 296 aa20.25■□□□□ 0.83
CPSF3-201ENST00000238112 COL11A2P13942 1736 aaPredicted RBP20.24■□□□□ 0.83
CPSF3-201ENST00000238112 GMNCA6NCL1 334 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 IPO5O00410 1097 aaKnown RBP20.24■□□□□ 0.83
CPSF3-201ENST00000238112 PPFIA2O75334 1257 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 EIF3BP55884 814 aaKnown RBP20.24■□□□□ 0.83
CPSF3-201ENST00000238112 RNF187Q5TA31 235 aaPredicted RBP20.24■□□□□ 0.83
CPSF3-201ENST00000238112 ICE2Q659A1 982 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 SAMD1Q6SPF0 538 aaPredicted RBP20.24■□□□□ 0.83
CPSF3-201ENST00000238112 MMS22LQ6ZRQ5 1243 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 INTS8Q75QN2 995 aaKnown RBP20.24■□□□□ 0.83
CPSF3-201ENST00000238112 PRMT6Q96LA8 375 aaPredicted RBP20.24■□□□□ 0.83
CPSF3-201ENST00000238112 ERP44Q9BS26 406 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 RANBP17Q9H2T7 1088 aaKnown RBP20.24■□□□□ 0.83
CPSF3-201ENST00000238112 CTTNBP2NLQ9P2B4 639 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 CAPN7Q9Y6W3 813 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 EMSYQ7Z589 1322 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 FAM187AA6NFU0 413 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 H0YHG0 523 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 COPB2P35606 906 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 MAGOHP61326 146 aaKnown RBP20.24■□□□□ 0.83
CPSF3-201ENST00000238112 PPARDQ03181 441 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 DHX34Q14147 1143 aaKnown RBP20.24■□□□□ 0.83
CPSF3-201ENST00000238112 SPDYCQ5MJ68 293 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 UBL4BQ8N7F7 174 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 LMO3Q8TAP4 145 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 MAGOHBQ96A72 148 aaKnown RBP20.24■□□□□ 0.83
CPSF3-201ENST00000238112 CYFIP2Q96F07 1278 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 STRA6Q9BX79 667 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 RASAL2Q9UJF2 1139 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 GGA2Q9UJY4 613 aa20.24■□□□□ 0.83
CPSF3-201ENST00000238112 SCN9AQ15858 1988 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 SYNGAP1Q96PV0 1343 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 TMOD1P28289 359 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 DUPD1Q68J44 220 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 PADI6Q6TGC4 694 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 MAEAQ7L5Y9 396 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 NEK9Q8TD19 979 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 SLC20A1Q8WUM9 679 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 ALG3Q92685 438 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 VTI1AQ96AJ9 217 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 PCIF1Q9H4Z3 704 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 ERVK-5Q9HDB9 667 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 TMOD4Q9NZQ9 345 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 TMOD2Q9NZR1 351 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 LARSQ9P2J5 1176 aaKnown RBP20.23■□□□□ 0.83
CPSF3-201ENST00000238112 ALG6Q9Y672 507 aa20.23■□□□□ 0.83
CPSF3-201ENST00000238112 MIF4GDA9UHW6 222 aaKnown RBP20.22■□□□□ 0.83
CPSF3-201ENST00000238112 DDX39AO00148 427 aaKnown RBP20.22■□□□□ 0.83
CPSF3-201ENST00000238112 TRAPPC3O43617 180 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 VAMP7P51809 220 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 CDR1P51861 262 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 MAPK7Q13164 816 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 AOC3Q16853 763 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 C11orf63Q6NUN7 778 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 DAW1Q8N136 415 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 C3orf20Q8ND61 904 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 TMEM206Q9H813 350 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 SMCHD1A6NHR9 2005 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 COL2A1P02458 1487 aaPredicted RBP20.22■□□□□ 0.83
CPSF3-201ENST00000238112 PFASO15067 1338 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 FTLP02792 175 aaPredicted RBP20.22■□□□□ 0.83
CPSF3-201ENST00000238112 HADHBP55084 474 aaKnown RBP20.22■□□□□ 0.83
CPSF3-201ENST00000238112 DLG4P78352 724 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 FBXW10Q5XX13 1052 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 HOOK3Q86VS8 718 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 GLG1Q92896 1179 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 PSMD1Q99460 953 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 RIT2Q99578 217 aa20.22■□□□□ 0.83
CPSF3-201ENST00000238112 TCP10L2B9ZVM9 353 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 FSBPO95073 299 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 VCAM1P19320 739 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 IFT88Q13099 833 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 B3GNT9Q6UX72 402 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 JAMLQ86YT9 394 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 CNOT8Q9UFF9 292 aaKnown RBP20.21■□□□□ 0.83
CPSF3-201ENST00000238112 SLX4Q8IY92 1834 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 P4HA2O15460 535 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 HSPA6P17066 643 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 GPC5P78333 572 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 ALCAMQ13740 583 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 ZYXQ15942 572 aaKnown RBP20.21■□□□□ 0.83
CPSF3-201ENST00000238112 MIER3Q7Z3K6 550 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 ARHGEF19Q8IW93 802 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 RPUSD2Q8IZ73 545 aaKnown RBP20.21■□□□□ 0.83
CPSF3-201ENST00000238112 ACCSQ96QU6 501 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms