RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 COA1Q9GZY4 146 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 INTS2Q9H0H0 1204 aaKnown RBP11.59□□□□□ -0.55
USP28-201ENST00000003302 PCDHA3Q9Y5H8 950 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 EMSYQ7Z589 1322 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 LOC102724159A0A0B4J2E5 919 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 YDJCA8MPS7 323 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 GCOM1H8Y6P7 765 aaPredicted RBP11.58□□□□□ -0.56
USP28-201ENST00000003302 FAM107AO95990 144 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 MYZAPP0CAP1 466 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 ADRA2BP18089 450 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 TNNC1P63316 161 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 MTM1Q13496 603 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 MESDQ14696 234 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 PWP2Q15269 919 aaKnown RBP11.58□□□□□ -0.56
USP28-201ENST00000003302 SYDE2Q5VT97 1194 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 CD302Q8IX05 232 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 OTUD6BQ8N6M0 293 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 SAAL1Q96ER3 474 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 UBE2TQ9NPD8 197 aaPredicted RBP11.58□□□□□ -0.56
USP28-201ENST00000003302 HOMER2Q9NSB8 354 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 NPEPPSP55786 919 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 ABCB5Q2M3G0 1257 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 DACT2Q5SW24 774 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 NOP9Q86U38 636 aaKnown RBP11.58□□□□□ -0.56
USP28-201ENST00000003302 SLX4Q8IY92 1834 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 FRMPD4Q14CM0 1322 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 THSD7AQ9UPZ6 1657 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 NFIBO00712 420 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 FTLP02792 175 aaPredicted RBP11.58□□□□□ -0.56
USP28-201ENST00000003302 ORC2Q13416 577 aaPredicted RBP11.58□□□□□ -0.56
USP28-201ENST00000003302 SNX1Q13596 522 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 Q4G0T1 1027 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 PLA2G4FQ68DD2 849 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 TATDN1Q6P1N9 297 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 WHAMMQ8TF30 809 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 KREMEN1Q96MU8 473 aa11.58□□□□□ -0.56
USP28-201ENST00000003302 HIP1RO75146 1068 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 FLOT1O75955 427 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 ADRB2P07550 413 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 MMEP08473 750 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 KRT13P13646 458 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 CDC25CP30307 473 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 VPS41P49754 854 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 MNAT1P51948 309 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 MMS22LQ6ZRQ5 1243 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 SP8Q8IXZ3 490 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 CSRNP1Q96S65 589 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 LXNQ9BS40 222 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 hCG_1984214I3L0E3 225 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 KIAA0391O15091 583 aaKnown RBP11.57□□□□□ -0.56
USP28-201ENST00000003302 TBCAO75347 108 aaKnown RBP11.57□□□□□ -0.56
USP28-201ENST00000003302 STAT1P42224 750 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 MPP2Q14168 576 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 DUPD1Q68J44 220 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 ZNF713Q8N859 430 aaPredicted RBP11.57□□□□□ -0.56
USP28-201ENST00000003302 MGARPQ8TDB4 240 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 WNK4Q96J92 1243 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 TSPYL1Q9H0U9 437 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 AZI2Q9H6S1 392 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 CYP26A1O43174 497 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 EYA4O95677 639 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 ITGBL1O95965 494 aaPredicted RBP11.57□□□□□ -0.56
USP28-201ENST00000003302 COMTP21964 271 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 CHKAP35790 457 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 JAMLQ86YT9 394 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 CBWD2Q8IUF1 395 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 FAM178BQ8IXR5 827 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 GPATCH11Q8N954 259 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 POMGNT1Q8WZA1 660 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 SEC16BQ96JE7 1060 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 KIF13BQ9NQT8 1826 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 DOCK5Q9H7D0 1870 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 ATP9AO75110 1047 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 FAM13AO94988 1023 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 HLA-DOAP06340 250 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 MMP10P09238 476 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 BMP3P12645 472 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 BMT2Q1RMZ1 405 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 CNPY4Q8N129 248 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 C1orf54Q8WWF1 131 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 SEC14L1Q92503 715 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 CCDC127Q96BQ5 260 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 GJD4Q96KN9 370 aaPredicted RBP11.57□□□□□ -0.56
USP28-201ENST00000003302 AAASQ9NRG9 546 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 SWAP70Q9UH65 585 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 CD2APQ9Y5K6 639 aa11.57□□□□□ -0.56
USP28-201ENST00000003302 LRRC37AA6NMS7 1700 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 KLRG2A4D1S0 409 aaPredicted RBP11.56□□□□□ -0.56
USP28-201ENST00000003302 PEX10O60683 326 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 GNA14O95837 355 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 CETPP11597 493 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 CHN1P15882 459 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 PTGIRP43119 386 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 HP1BP3Q5SSJ5 553 aaPredicted RBP11.56□□□□□ -0.56
USP28-201ENST00000003302 CCDC25Q86WR0 208 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 THOC1Q96FV9 657 aaKnown RBP11.56□□□□□ -0.56
USP28-201ENST00000003302 ZDHHC15Q96MV8 337 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 FMO2Q99518 471 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 SUCLA2Q9P2R7 463 aaPredicted RBP11.56□□□□□ -0.56
USP28-201ENST00000003302 TSKSQ9UJT2 592 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms